Variant report
| Variant | rs2591010 |
|---|---|
| Chromosome Location | chr8:69311204-69311205 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1517129 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs17467559 | 1.00[CEU][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2243700 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2243702 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2246592 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2255882 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2591014 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2591019 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs2591020 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs2591021 | 1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2591024 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs2676632 | 0.98[EUR][1000 genomes] |
| rs2676649 | 0.94[EUR][1000 genomes] |
| rs2676650 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs2676651 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2676653 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2676654 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs2676655 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2676656 | 0.97[EUR][1000 genomes] |
| rs814440 | 0.86[CEU][hapmap] |
| rs814442 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs814455 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948687 | chr8:69041121-69642540 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031040 | chr8:69265471-69315554 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv508512 | chr8:69268794-69324532 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1023810 | chr8:69308665-69440129 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv539644 | chr8:69308665-69440129 | Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2591010 | C8orf34 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:69308200-69312200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
