Variant report

Variant	rs17499791
Chromosome Location	chr7:26999666-26999667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17150529	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17464349	0.87[AMR][1000 genomes]
rs17464370	0.87[AMR][1000 genomes]
rs17465125	0.88[YRI][hapmap]
rs17499539	0.87[AMR][1000 genomes]
rs17499546	0.87[AMR][1000 genomes]
rs17499770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17499840	0.89[AFR][1000 genomes]
rs17499847	1.00[AFR][1000 genomes]
rs2088587	0.87[AMR][1000 genomes]
rs58221865	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60974294	0.85[AFR][1000 genomes]
rs6945174	0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7780915	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1033272	chr7:26976426-27020206	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26997800-27000000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:26998000-27000000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:26998000-27000200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:26998000-27000200	Enhancers	NHDF-Ad	bronchial
5	chr7:26998800-27000000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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