Variant report

Variant	rs17464370
Chromosome Location	chr7:26969660-26969661
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26966652..26968552-chr7:26968605..26970350,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10085562	1.00[JPT][hapmap]
rs10235680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10246300	1.00[JPT][hapmap]
rs10246483	1.00[JPT][hapmap]
rs10249383	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10250097	1.00[JPT][hapmap]
rs10250304	1.00[JPT][hapmap]
rs10251817	1.00[JPT][hapmap]
rs10252268	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10254460	1.00[JPT][hapmap]
rs10254467	1.00[JPT][hapmap]
rs10257057	1.00[JPT][hapmap]
rs10261927	1.00[JPT][hapmap]
rs10262212	1.00[JPT][hapmap]
rs10262527	1.00[JPT][hapmap]
rs10262797	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10265607	1.00[JPT][hapmap]
rs10271306	1.00[JPT][hapmap]
rs10277060	1.00[JPT][hapmap]
rs1030647	1.00[JPT][hapmap]
rs10486473	1.00[JPT][hapmap]
rs10486474	1.00[JPT][hapmap]
rs10486480	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10486481	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12334154	1.00[JPT][hapmap]
rs1391805	1.00[CHB][hapmap]
rs17150529	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17154428	1.00[JPT][hapmap]
rs17154538	1.00[JPT][hapmap]
rs17154642	0.83[ASN][1000 genomes]
rs17313134	1.00[JPT][hapmap]
rs17323962	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17371905	1.00[JPT][hapmap]
rs17464349	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17499539	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17499546	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17499588	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17499770	0.87[AMR][1000 genomes]
rs17499791	0.87[AMR][1000 genomes]
rs17499840	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17500099	0.91[ASN][1000 genomes]
rs17500134	0.91[ASN][1000 genomes]
rs2088587	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs213524	1.00[CHB][hapmap]
rs3735547	1.00[JPT][hapmap]
rs3801835	1.00[JPT][hapmap]
rs3807593	1.00[JPT][hapmap]
rs4141345	1.00[JPT][hapmap]
rs4141346	1.00[JPT][hapmap]
rs58221865	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs586947	1.00[CHB][hapmap]
rs60974294	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6945174	0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950668	1.00[JPT][hapmap]
rs6960091	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7783807	1.00[JPT][hapmap]
rs7784380	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26968000-26971000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr7:26968200-26970800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:26968400-26970200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:26968800-26969800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:26969000-26970000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:26969000-26970000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:26969400-26970000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:26969400-26970800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:26969400-26970800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:26969600-26970000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:26969600-26970000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:26969600-26970800	Enhancers	NHDF-Ad	bronchial
13	chr7:26969600-26970800	Enhancers	NHEK	skin

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