Variant report
Variant | rs17500099 |
---|---|
Chromosome Location | chr7:27050461-27050462 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10235680 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10249383 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10250097 | 1.00[JPT][hapmap] |
rs10252268 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10262797 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10271306 | 1.00[JPT][hapmap] |
rs10277060 | 1.00[JPT][hapmap] |
rs10486480 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10486481 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs11563592 | 0.87[AMR][1000 genomes] |
rs1391805 | 1.00[CHB][hapmap] |
rs17154642 | 0.91[ASN][1000 genomes] |
rs17323962 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs17464349 | 0.91[ASN][1000 genomes] |
rs17464370 | 0.91[ASN][1000 genomes] |
rs17465125 | 0.89[YRI][hapmap] |
rs17499539 | 0.91[ASN][1000 genomes] |
rs17499546 | 0.91[ASN][1000 genomes] |
rs17499588 | 0.81[ASN][1000 genomes] |
rs17499840 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs17499847 | 0.87[AMR][1000 genomes] |
rs17500120 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rs17500134 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2088587 | 0.91[ASN][1000 genomes] |
rs213524 | 1.00[CHB][hapmap] |
rs3801835 | 1.00[JPT][hapmap] |
rs58221865 | 1.00[ASN][1000 genomes] |
rs586947 | 1.00[CHB][hapmap] |
rs6960091 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap] |
rs7780915 | 0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1025538 | chr7:26482342-27376045 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
2 | nsv538805 | chr7:26482342-27376045 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
3 | nsv1018709 | chr7:26990384-27216552 | Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 140 gene(s) | inside rSNPs | diseases |
4 | nsv538806 | chr7:26990384-27216552 | Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 140 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:27048200-27064400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |