Variant report

Variant	rs17499588
Chromosome Location	chr7:26971067-26971068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17150529	0.90[AFR][1000 genomes]
rs17464349	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17464370	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17499539	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17499546	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17499840	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17500099	0.81[ASN][1000 genomes]
rs17500134	0.81[ASN][1000 genomes]
rs2088587	0.91[AFR][1000 genomes]
rs58221865	0.81[ASN][1000 genomes]
rs60974294	0.88[AFR][1000 genomes]
rs6945174	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	esv3375882	chr7:26969761-26989047	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26970800-26976600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:26970800-26976600	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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