Variant report

Variant	rs6945174
Chromosome Location	chr7:26960663-26960664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs15494	1.00[MEX][hapmap]
rs17150529	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17464349	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17464370	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17499539	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17499546	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17499588	0.88[AFR][1000 genomes]
rs17499770	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17499791	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17499847	0.85[AFR][1000 genomes]
rs2088587	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58221865	1.00[AMR][1000 genomes]
rs60974294	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6943358	1.00[MEX][hapmap]
rs7780915	1.00[ASW][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26956000-26961400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:26957000-26962200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:26957400-26962400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:26958400-26960800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:26959200-26960800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:26960400-26961400	Weak transcription	HMEC	breast
7	chr7:26960400-26969600	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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