Variant report

Variant	rs17150529
Chromosome Location	chr7:26945988-26945989
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17464349	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17464370	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17499539	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17499546	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17499588	0.90[AFR][1000 genomes]
rs17499770	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17499791	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17499847	0.86[AFR][1000 genomes]
rs2088587	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58221865	0.87[AMR][1000 genomes]
rs60974294	0.98[AFR][1000 genomes]
rs6945174	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26943000-26949400	Weak transcription	HepG2	liver
2	chr7:26945400-26946200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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