Variant report

Variant	rs58221865
Chromosome Location	chr7:26994679-26994680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17150529	0.87[AMR][1000 genomes]
rs17154642	0.91[ASN][1000 genomes]
rs17464349	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17464370	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17499539	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17499546	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17499588	0.81[ASN][1000 genomes]
rs17499770	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17499791	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17499840	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17499847	0.89[AFR][1000 genomes]
rs17500099	1.00[ASN][1000 genomes]
rs17500134	1.00[ASN][1000 genomes]
rs2088587	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60974294	0.89[AMR][1000 genomes]
rs6945174	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1033272	chr7:26976426-27020206	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26991200-26998000	Weak transcription	NHDF-Ad	bronchial
2	chr7:26991600-26999200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:26992200-26994800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:26994400-26994800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:26994400-26995000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:26994400-26995000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:26994600-26994800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:26994600-26995000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr7:26994600-26995000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:26994600-26995000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:26994600-26995000	Bivalent Enhancer	Fetal Kidney	kidney
12	chr7:26994600-26995000	Flanking Active TSS	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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