Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10494576	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12096871	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1327140	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17515450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17575023	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1930294	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650659	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650660	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650661	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651181	1.00[ASN][1000 genomes]
rs4651187	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651188	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651198	1.00[ASN][1000 genomes]
rs58517777	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58777747	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59333709	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516202	1.00[ASN][1000 genomes]
rs7516328	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517860	1.00[ASN][1000 genomes]
rs7528912	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530685	1.00[ASN][1000 genomes]
rs7539063	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543122	1.00[ASN][1000 genomes]
rs884902	1.00[ASN][1000 genomes]
rs9425331	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425621	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425622	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184207000-184211800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:184210200-184212000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:184210800-184212400	Enhancers	Small Intestine	intestine
4	chr1:184211000-184212600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:184211200-184212400	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:184211400-184211600	Enhancers	Left Ventricle	heart
7	chr1:184211400-184211600	Enhancers	Psoas Muscle	Psoas
8	chr1:184211400-184212200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:184211400-184212200	Enhancers	NHLF	lung
10	chr1:184211400-184212200	Enhancers	Osteobl	bone
11	chr1:184211400-184212400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:184211400-184212400	Enhancers	HUVEC	blood vessel
13	chr1:184211400-184212400	Enhancers	NH-A	brain
14	chr1:184211400-184212400	Enhancers	NHDF-Ad	bronchial
15	chr1:184211400-184212600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr1:184211400-184212800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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