Variant report
| Variant | rs17575023 |
|---|---|
| Chromosome Location | chr1:184220542-184220543 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:184211688..184213788-chr1:184219586..184222091,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10494576 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12096871 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1327140 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17515450 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17515519 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1930294 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4650659 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4650660 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4650661 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4651181 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4651187 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4651188 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4651198 | 1.00[ASN][1000 genomes] |
| rs58517777 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58777747 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59333709 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7516202 | 1.00[ASN][1000 genomes] |
| rs7516328 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7517860 | 1.00[ASN][1000 genomes] |
| rs7528912 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7530685 | 1.00[ASN][1000 genomes] |
| rs7539063 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7543122 | 1.00[ASN][1000 genomes] |
| rs884902 | 1.00[ASN][1000 genomes] |
| rs9425331 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9425621 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9425622 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530079 | chr1:183797938-184639971 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:184212000-184222200 | Weak transcription | Fetal Heart | heart |
| 2 | chr1:184212200-184229400 | Weak transcription | NHLF | lung |
