Variant report
| Variant | rs7517860 |
|---|---|
| Chromosome Location | chr1:184272869-184272870 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10494576 | 1.00[ASN][1000 genomes] |
| rs12096871 | 1.00[ASN][1000 genomes] |
| rs1327140 | 1.00[ASN][1000 genomes] |
| rs17515450 | 1.00[ASN][1000 genomes] |
| rs17515519 | 1.00[ASN][1000 genomes] |
| rs17575023 | 1.00[ASN][1000 genomes] |
| rs1930294 | 1.00[ASN][1000 genomes] |
| rs4288562 | 0.90[EUR][1000 genomes] |
| rs4650659 | 1.00[ASN][1000 genomes] |
| rs4650660 | 1.00[ASN][1000 genomes] |
| rs4650661 | 1.00[ASN][1000 genomes] |
| rs4651181 | 1.00[ASN][1000 genomes] |
| rs4651187 | 1.00[ASN][1000 genomes] |
| rs4651188 | 1.00[ASN][1000 genomes] |
| rs4651198 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57904419 | 0.85[EUR][1000 genomes] |
| rs58386684 | 0.85[EUR][1000 genomes] |
| rs58517777 | 1.00[ASN][1000 genomes] |
| rs58777747 | 1.00[ASN][1000 genomes] |
| rs59333709 | 1.00[ASN][1000 genomes] |
| rs60179616 | 0.85[EUR][1000 genomes] |
| rs73059563 | 0.81[EUR][1000 genomes] |
| rs73059573 | 0.85[EUR][1000 genomes] |
| rs7516202 | 0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7516328 | 1.00[ASN][1000 genomes] |
| rs7528912 | 1.00[ASN][1000 genomes] |
| rs7530685 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7539063 | 1.00[ASN][1000 genomes] |
| rs7543122 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs884902 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9425331 | 1.00[ASN][1000 genomes] |
| rs9425621 | 1.00[ASN][1000 genomes] |
| rs9425622 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530079 | chr1:183797938-184639971 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:184268200-184279400 | Weak transcription | Pancreas | Pancrea |
| 2 | chr1:184269400-184274800 | Weak transcription | HSMM | muscle |
