Variant report

Variant	rs7516202
Chromosome Location	chr1:184284174-184284175
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10494576	1.00[ASN][1000 genomes]
rs12096871	1.00[ASN][1000 genomes]
rs1327140	1.00[ASN][1000 genomes]
rs16822804	0.84[EUR][1000 genomes]
rs17515450	1.00[ASN][1000 genomes]
rs17515519	1.00[ASN][1000 genomes]
rs17575023	1.00[ASN][1000 genomes]
rs1930294	1.00[ASN][1000 genomes]
rs4288562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4650659	1.00[ASN][1000 genomes]
rs4650660	1.00[ASN][1000 genomes]
rs4650661	1.00[ASN][1000 genomes]
rs4651181	1.00[ASN][1000 genomes]
rs4651187	1.00[ASN][1000 genomes]
rs4651188	1.00[ASN][1000 genomes]
rs4651198	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651202	1.00[CEU][hapmap]
rs57904419	0.95[EUR][1000 genomes]
rs58386684	0.95[EUR][1000 genomes]
rs58517777	1.00[ASN][1000 genomes]
rs58777747	1.00[ASN][1000 genomes]
rs59333709	1.00[ASN][1000 genomes]
rs60179616	0.95[EUR][1000 genomes]
rs73059563	0.90[EUR][1000 genomes]
rs73059573	0.95[EUR][1000 genomes]
rs7516328	1.00[ASN][1000 genomes]
rs7517860	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528912	1.00[ASN][1000 genomes]
rs7530685	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539063	1.00[ASN][1000 genomes]
rs7543122	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884902	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425331	1.00[ASN][1000 genomes]
rs9425621	1.00[ASN][1000 genomes]
rs9425622	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184282400-184285000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:184282800-184285600	Enhancers	NHDF-Ad	bronchial
3	chr1:184283200-184284200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:184283600-184284800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:184284000-184284600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:184284000-184284600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:184284000-184284800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:184284000-184284800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:184284000-184285000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:184284000-184285000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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