Variant report

Variant	rs4651198
Chromosome Location	chr1:184270276-184270277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184268563..184270687-chr1:184282853..184285208,2	MCF-7	breast:
2	chr1:184258327..184260593-chr1:184267930..184270489,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207080	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10494576	1.00[ASN][1000 genomes]
rs12096871	1.00[ASN][1000 genomes]
rs1327140	1.00[ASN][1000 genomes]
rs16822804	0.84[EUR][1000 genomes]
rs17515450	1.00[ASN][1000 genomes]
rs17515519	1.00[ASN][1000 genomes]
rs17575023	1.00[ASN][1000 genomes]
rs1930294	1.00[ASN][1000 genomes]
rs4288562	1.00[EUR][1000 genomes]
rs4650659	1.00[ASN][1000 genomes]
rs4650660	1.00[ASN][1000 genomes]
rs4650661	1.00[ASN][1000 genomes]
rs4651181	1.00[ASN][1000 genomes]
rs4651187	1.00[ASN][1000 genomes]
rs4651188	1.00[ASN][1000 genomes]
rs4651202	1.00[CEU][hapmap]
rs57904419	0.95[EUR][1000 genomes]
rs58386684	0.95[EUR][1000 genomes]
rs58517777	1.00[ASN][1000 genomes]
rs58777747	1.00[ASN][1000 genomes]
rs59333709	1.00[ASN][1000 genomes]
rs60179616	0.95[EUR][1000 genomes]
rs73059563	0.90[EUR][1000 genomes]
rs73059573	0.95[EUR][1000 genomes]
rs7516202	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516328	1.00[ASN][1000 genomes]
rs7517860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528912	1.00[ASN][1000 genomes]
rs7530685	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539063	1.00[ASN][1000 genomes]
rs7543122	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884902	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425331	1.00[ASN][1000 genomes]
rs9425621	1.00[ASN][1000 genomes]
rs9425622	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184265200-184270600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:184265200-184271800	Enhancers	NHLF	lung
3	chr1:184266000-184270400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:184267600-184270800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:184268000-184270400	Enhancers	HUVEC	blood vessel
6	chr1:184268200-184279400	Weak transcription	Pancreas	Pancrea
7	chr1:184268400-184270600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:184268600-184270600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:184269000-184270400	Enhancers	Osteobl	bone
10	chr1:184269000-184272400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:184269200-184270400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:184269200-184270800	Enhancers	NHDF-Ad	bronchial
13	chr1:184269400-184274800	Weak transcription	HSMM	muscle
14	chr1:184269600-184270400	Enhancers	Fetal Heart	heart

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