Variant report

Variant	rs17549671
Chromosome Location	chr1:197019979-197019980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs17514584	1.00[AMR][1000 genomes]
rs17514591	1.00[AMR][1000 genomes]
rs17514606	1.00[AMR][1000 genomes]
rs17514732	1.00[AMR][1000 genomes]
rs17514781	1.00[AMR][1000 genomes]
rs17514795	1.00[AMR][1000 genomes]
rs17514802	1.00[AMR][1000 genomes]
rs17514816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17549514	1.00[AMR][1000 genomes]
rs17549540	1.00[AMR][1000 genomes]
rs17549547	1.00[AMR][1000 genomes]
rs17549582	1.00[AMR][1000 genomes]
rs17549596	1.00[AMR][1000 genomes]
rs17549657	1.00[AMR][1000 genomes]
rs17549818	1.00[AMR][1000 genomes]
rs17549859	1.00[AMR][1000 genomes]
rs17549873	1.00[AMR][1000 genomes]
rs35897746	1.00[AMR][1000 genomes]
rs56660423	1.00[AMR][1000 genomes]
rs56912014	1.00[AMR][1000 genomes]
rs59560396	1.00[AMR][1000 genomes]
rs59820773	1.00[AMR][1000 genomes]
rs5999	1.00[AMR][1000 genomes]
rs6000	1.00[AMR][1000 genomes]
rs60769813	1.00[AMR][1000 genomes]
rs61117530	1.00[AMR][1000 genomes]
rs61172533	1.00[AMR][1000 genomes]
rs61249253	1.00[AMR][1000 genomes]
rs61264948	1.00[AMR][1000 genomes]
rs61278057	1.00[AMR][1000 genomes]
rs62624968	1.00[AMR][1000 genomes]
rs6428388	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6669374	1.00[AMR][1000 genomes]
rs6669388	1.00[AMR][1000 genomes]
rs6675840	1.00[AMR][1000 genomes]
rs6700344	0.88[YRI][hapmap]
rs6700604	1.00[AMR][1000 genomes]
rs6702338	1.00[AMR][1000 genomes]
rs6702739	1.00[AMR][1000 genomes]
rs7513644	1.00[AMR][1000 genomes]
rs7520405	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7528827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7534439	1.00[AMR][1000 genomes]
rs7535814	1.00[AMR][1000 genomes]
rs7539363	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7543584	1.00[AMR][1000 genomes]
rs7545831	1.00[AMR][1000 genomes]
rs7546591	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7554881	1.00[AMR][1000 genomes]
rs9427663	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs9727516	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758990	chr1:196590837-197169772	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv427897	chr1:196590837-197169772	Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv2756880	chr1:196709223-197066074	ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv2757767	chr1:196977799-197169772	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv873063	chr1:197007479-197025431	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a
7	nsv873064	chr1:197008597-197035538	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197017400-197029400	Strong transcription	Liver	Liver

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