The 2.0 version of rSNPBase

Variant report

Variant rs6675840
Chromosome Location chr1:197114925-197114926
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197073000-197115000 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:197074000-197115000 Weak transcription Fetal Brain Male brain
3 chr1:197108000-197115000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:197108600-197115000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr1:197108600-197115200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:197109400-197115000 Weak transcription HSMMtube muscle
7 chr1:197111400-197115000 Weak transcription Small Intestine intestine
8 chr1:197113000-197116400 Active TSS NHDF-Ad bronchial
9 chr1:197113400-197115000 Weak transcription Psoas Muscle Psoas
10 chr1:197113400-197115200 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr1:197113400-197115200 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr1:197113400-197116400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr1:197113400-197116400 Active TSS iPS-20b Cell Line embryonic stem cell
14 chr1:197113400-197116400 Active TSS Brain Germinal Matrix brain
15 chr1:197113400-197116400 Active TSS NHLF lung
16 chr1:197113400-197117000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:197113600-197115000 Enhancers Primary neutrophils fromperipheralblood blood
18 chr1:197113600-197115000 Active TSS Fetal Brain Female brain
19 chr1:197113600-197115400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:197113600-197116200 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr1:197113600-197116200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
22 chr1:197113600-197116200 Active TSS Fetal Thymus thymus
23 chr1:197113600-197116200 Active TSS Thymus Thymus
24 chr1:197113600-197116400 Active TSS H1 Cell Line embryonic stem cell
25 chr1:197113600-197116400 Active TSS H9 Cell Line embryonic stem cell
26 chr1:197113600-197116400 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr1:197113600-197116400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr1:197113600-197116400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
29 chr1:197113600-197116400 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
30 chr1:197113600-197116400 Active TSS Duodenum Mucosa Duodenum
31 chr1:197113600-197116400 Active TSS Fetal Kidney kidney
32 chr1:197113600-197116400 Active TSS Fetal Muscle Leg muscle
33 chr1:197113600-197116400 Active TSS A549 lung
34 chr1:197113800-197116200 Active TSS HUES6 Cell Line embryonic stem cell
35 chr1:197113800-197116400 Active TSS ES-WA7 Cell Line embryonic stem cell
36 chr1:197113800-197116400 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
37 chr1:197113800-197116400 Active TSS iPS-15b Cell Line embryonic stem cell
38 chr1:197113800-197116400 Active TSS Fetal Muscle Trunk muscle
39 chr1:197113800-197116400 Active TSS GM12878-XiMat blood
40 chr1:197113800-197116400 Active TSS HSMM muscle
41 chr1:197114000-197116000 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
42 chr1:197114000-197116200 Active TSS Primary T regulatory cells fromperipheralblood blood
43 chr1:197114000-197116200 Active TSS Cortex derived primary cultured neurospheres brain
44 chr1:197114000-197116400 Active TSS ES-I3 Cell Line embryonic stem cell
45 chr1:197114000-197116400 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:197114000-197116400 Active TSS HUES48 Cell Line embryonic stem cell
47 chr1:197114000-197116400 Active TSS iPS-18 Cell Line embryonic stem cell
48 chr1:197114000-197116400 Active TSS ES-UCSF4 Cell Line embryonic stem cell
49 chr1:197114000-197116400 Active TSS Fetal Stomach stomach
50 chr1:197114000-197116400 Active TSS NHEK skin

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Last update: Aug 31, 2015