The 2.0 version of rSNPBase

Variant report

Variant rs4556392
Chromosome Location chr1:197106249-197106250
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197052200-197106600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:197052200-197114200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:197054200-197113600 Weak transcription Fetal Kidney kidney
4 chr1:197055000-197114200 Weak transcription Primary B cells from cord blood blood
5 chr1:197072600-197107400 Weak transcription Fetal Intestine Small intestine
6 chr1:197073000-197115000 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:197074000-197115000 Weak transcription Fetal Brain Male brain
8 chr1:197077000-197114200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:197083600-197108000 Strong transcription HUVEC blood vessel
10 chr1:197084400-197106600 Weak transcription Fetal Stomach stomach
11 chr1:197085800-197109600 Weak transcription Brain Germinal Matrix brain
12 chr1:197085800-197111000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:197089800-197108400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
14 chr1:197090000-197110800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr1:197091000-197106600 Weak transcription Fetal Muscle Trunk muscle
16 chr1:197093800-197108400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr1:197095800-197114400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr1:197096400-197106600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr1:197097800-197106600 Weak transcription H9 Cell Line embryonic stem cell
20 chr1:197099200-197109600 Weak transcription HepG2 liver
21 chr1:197100200-197106600 Weak transcription Thymus Thymus
22 chr1:197100400-197109000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr1:197100400-197109600 Weak transcription NHLF lung
24 chr1:197100400-197112800 Strong transcription HUES64 Cell Line embryonic stem cell
25 chr1:197100400-197113600 Weak transcription HSMM muscle
26 chr1:197100600-197108200 Weak transcription Fetal Heart heart
27 chr1:197100600-197111200 Weak transcription NH-A brain
28 chr1:197100600-197113000 Strong transcription iPS-20b Cell Line embryonic stem cell
29 chr1:197100800-197107400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr1:197100800-197114200 Weak transcription Fetal Intestine Large intestine
31 chr1:197101000-197107200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr1:197101000-197107600 Weak transcription ES-I3 Cell Line embryonic stem cell
33 chr1:197101000-197108800 Weak transcription Muscle Satellite Cultured Cells --
34 chr1:197101000-197108800 Weak transcription HMEC breast
35 chr1:197101000-197109200 Weak transcription Osteobl bone
36 chr1:197101000-197109400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:197101000-197110800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr1:197101200-197107600 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr1:197101200-197109200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:197101200-197109600 Weak transcription NHEK skin
41 chr1:197101200-197113000 Weak transcription iPS-15b Cell Line embryonic stem cell
42 chr1:197101600-197107400 Weak transcription GM12878-XiMat blood
43 chr1:197101800-197107200 Weak transcription Fetal Muscle Leg muscle
44 chr1:197102600-197107400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr1:197102600-197113800 Weak transcription ES-WA7 Cell Line embryonic stem cell
46 chr1:197102800-197106400 Weak transcription H1 Cell Line embryonic stem cell
47 chr1:197102800-197107800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:197103000-197106600 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr1:197103000-197107400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr1:197103000-197108000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015