The 2.0 version of rSNPBase

Variant report

Variant rs7554802
Chromosome Location chr1:197148599-197148600
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197116400-197155000 Weak transcription Fetal Brain Male brain
2 chr1:197116600-197169800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:197121600-197154800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:197124600-197155400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:197125200-197156000 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr1:197125200-197156400 Weak transcription Right Ventricle heart
7 chr1:197125400-197155600 Weak transcription Fetal Stomach stomach
8 chr1:197125400-197156200 Weak transcription Pancreas Pancrea
9 chr1:197125400-197156400 Weak transcription Aorta Aorta
10 chr1:197125400-197156400 Weak transcription Lung lung
11 chr1:197125400-197168400 Weak transcription Psoas Muscle Psoas
12 chr1:197125600-197160000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:197125600-197169600 Weak transcription Esophagus oesophagus
14 chr1:197125800-197158400 Weak transcription Spleen Spleen
15 chr1:197126400-197169600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:197128200-197161000 Strong transcription Primary T helper cells fromperipheralblood blood
17 chr1:197128400-197157000 Weak transcription Colonic Mucosa Colon
18 chr1:197129000-197155400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:197129200-197149200 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr1:197130200-197149000 Weak transcription Brain Inferior Temporal Lobe brain
21 chr1:197130200-197156200 Weak transcription Rectal Smooth Muscle rectum
22 chr1:197132400-197154800 Weak transcription Primary T helper naive cells from peripheral blood blood
23 chr1:197132400-197156400 Weak transcription H9 Cell Line embryonic stem cell
24 chr1:197135200-197161800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:197136000-197161600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
26 chr1:197139800-197150600 Strong transcription Primary T regulatory cells fromperipheralblood blood
27 chr1:197139800-197151000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr1:197140200-197150600 Strong transcription Primary T helper cells PMA-I stimulated --
29 chr1:197140200-197151800 Weak transcription Stomach Mucosa stomach
30 chr1:197140800-197148600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr1:197140800-197151200 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr1:197141400-197166200 Weak transcription ES-I3 Cell Line embryonic stem cell
33 chr1:197141600-197150400 Strong transcription Dnd41 blood
34 chr1:197142000-197159600 Strong transcription Primary T cells fromperipheralblood blood
35 chr1:197142200-197150400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:197142200-197150600 Strong transcription HUES64 Cell Line embryonic stem cell
37 chr1:197142200-197150800 Strong transcription Primary B cells from peripheral blood blood
38 chr1:197142200-197159800 Strong transcription Fetal Thymus thymus
39 chr1:197142400-197150200 Strong transcription Rectal Mucosa Donor 29 rectum
40 chr1:197142400-197153400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
41 chr1:197142600-197152800 Strong transcription Rectal Mucosa Donor 31 rectum
42 chr1:197143000-197150400 Strong transcription Primary B cells from cord blood blood
43 chr1:197143000-197155000 Weak transcription Brain Cingulate Gyrus brain
44 chr1:197143200-197165800 Weak transcription Small Intestine intestine
45 chr1:197143400-197154800 Weak transcription Brain Hippocampus Middle brain
46 chr1:197143600-197149000 Weak transcription Fetal Muscle Leg muscle
47 chr1:197143600-197154000 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr1:197143600-197156000 Weak transcription Thymus Thymus
49 chr1:197143800-197154400 Weak transcription Primary T killer naive cells fromperipheralblood blood
50 chr1:197143800-197156000 Weak transcription HMEC breast

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Last update: Aug 31, 2015