The 2.0 version of rSNPBase

Variant report

Variant rs1571964
Chromosome Location chr1:197113073-197113074
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197052200-197114200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:197054200-197113600 Weak transcription Fetal Kidney kidney
3 chr1:197055000-197114200 Weak transcription Primary B cells from cord blood blood
4 chr1:197073000-197115000 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:197074000-197115000 Weak transcription Fetal Brain Male brain
6 chr1:197077000-197114200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:197095800-197114400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
8 chr1:197100400-197113600 Weak transcription HSMM muscle
9 chr1:197100800-197114200 Weak transcription Fetal Intestine Large intestine
10 chr1:197102600-197113800 Weak transcription ES-WA7 Cell Line embryonic stem cell
11 chr1:197104600-197113600 Weak transcription Primary hematopoietic stem cells blood
12 chr1:197105400-197113600 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr1:197106400-197113400 Strong transcription HUES48 Cell Line embryonic stem cell
14 chr1:197107800-197113600 Weak transcription H9 Cell Line embryonic stem cell
15 chr1:197107800-197113800 Weak transcription Fetal Intestine Small intestine
16 chr1:197108000-197113800 Enhancers Primary T regulatory cells fromperipheralblood blood
17 chr1:197108000-197115000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr1:197108400-197113400 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr1:197108400-197113600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
20 chr1:197108600-197113600 Weak transcription Fetal Muscle Leg muscle
21 chr1:197108600-197113800 Weak transcription Fetal Muscle Trunk muscle
22 chr1:197108600-197114000 Weak transcription Fetal Stomach stomach
23 chr1:197108600-197115000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr1:197108600-197115200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:197109400-197115000 Weak transcription HSMMtube muscle
26 chr1:197109600-197113600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:197109600-197113600 Active TSS GM12878-XiMat blood
28 chr1:197109600-197113800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr1:197109600-197114200 Transcr. at gene 5' and 3' Dnd41 blood
30 chr1:197109800-197113400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:197109800-197113600 Weak transcription Fetal Brain Female brain
32 chr1:197110200-197113400 Weak transcription Brain Germinal Matrix brain
33 chr1:197110200-197113600 Weak transcription Primary T cells from cord blood blood
34 chr1:197110400-197113400 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr1:197110400-197113400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:197111000-197113400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr1:197111000-197113600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
38 chr1:197111200-197113600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:197111200-197113600 Weak transcription Thymus Thymus
40 chr1:197111400-197113400 Weak transcription HMEC breast
41 chr1:197111400-197113800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
42 chr1:197111400-197115000 Weak transcription Small Intestine intestine
43 chr1:197111600-197113400 Weak transcription NH-A brain
44 chr1:197111800-197113600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
45 chr1:197112000-197113200 Weak transcription NHEK skin
46 chr1:197112200-197113600 Enhancers Liver Liver
47 chr1:197112200-197113600 Enhancers HepG2 liver
48 chr1:197112400-197113400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
49 chr1:197112400-197113600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr1:197112600-197113200 Enhancers Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015