Variant report

Variant	rs17578294
Chromosome Location	chr3:25233081-25233082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12152294	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17517455	0.85[EUR][1000 genomes]
rs17517875	0.95[EUR][1000 genomes]
rs17518622	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17576595	0.85[EUR][1000 genomes]
rs17576629	0.84[EUR][1000 genomes]
rs17576864	0.85[EUR][1000 genomes]
rs17577191	0.95[EUR][1000 genomes]
rs55750806	0.89[EUR][1000 genomes]
rs56150061	0.81[EUR][1000 genomes]
rs73042334	0.84[AMR][1000 genomes]
rs73048442	0.83[EUR][1000 genomes]
rs73048447	0.85[EUR][1000 genomes]
rs73050322	0.85[EUR][1000 genomes]
rs73050329	0.85[EUR][1000 genomes]
rs73050336	0.87[EUR][1000 genomes]
rs73050338	0.87[EUR][1000 genomes]
rs73050339	0.87[EUR][1000 genomes]
rs73050340	0.88[EUR][1000 genomes]
rs73050349	0.88[EUR][1000 genomes]
rs73050358	0.95[EUR][1000 genomes]
rs73050373	0.95[EUR][1000 genomes]
rs73052497	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73054309	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73054326	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73054328	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25232200-25233400	Enhancers	Fetal Stomach	stomach
2	chr3:25232800-25233200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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