Variant report

Variant	rs55750806
Chromosome Location	chr3:25202802-25202803
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25201532..25204868-chr3:25206067..25208834,3	K562	blood:
2	chr3:25200008..25202995-chr3:25206457..25208830,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12152294	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17517413	1.00[AMR][1000 genomes]
rs17517455	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17517778	1.00[AMR][1000 genomes]
rs17517875	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17518622	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17576595	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17576629	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17576864	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17577191	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17577540	1.00[AMR][1000 genomes]
rs17578294	0.89[EUR][1000 genomes]
rs56034169	0.80[AMR][1000 genomes]
rs56150061	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56189892	0.87[EUR][1000 genomes]
rs57259009	0.80[EUR][1000 genomes]
rs73048404	0.81[EUR][1000 genomes]
rs73048410	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73048413	0.80[AMR][1000 genomes]
rs73048430	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73048442	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73048447	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73048450	1.00[AMR][1000 genomes]
rs73049954	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73049956	0.80[AMR][1000 genomes]
rs73050322	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73050329	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73050336	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73050338	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73050339	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73050340	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73050349	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73050358	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73050366	1.00[AMR][1000 genomes]
rs73050373	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73052497	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73054309	0.84[EUR][1000 genomes]
rs73054326	0.84[AMR][1000 genomes]
rs73054328	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9840225	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25194000-25211800	Weak transcription	Aorta	Aorta
2	chr3:25197600-25205200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:25198600-25211200	Weak transcription	Fetal Stomach	stomach
4	chr3:25198800-25207000	Weak transcription	Fetal Lung	lung
5	chr3:25200600-25214600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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