Variant report

Variant	rs73048430
Chromosome Location	chr3:25185220-25185221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25173033..25175213-chr3:25183319..25185736,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12152294	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17517413	0.83[AMR][1000 genomes]
rs17517455	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17517778	0.83[AMR][1000 genomes]
rs17517875	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17576595	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17576629	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17576864	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17577191	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17577540	0.83[AMR][1000 genomes]
rs55642444	1.00[AFR][1000 genomes]
rs55750806	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55809331	0.83[AMR][1000 genomes]
rs56034169	0.88[AMR][1000 genomes]
rs56150061	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56189892	0.88[EUR][1000 genomes]
rs57259009	0.87[EUR][1000 genomes]
rs73042357	1.00[AFR][1000 genomes]
rs73042364	1.00[AFR][1000 genomes]
rs73048404	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73048410	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73048413	0.88[AMR][1000 genomes]
rs73048442	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73048447	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73048450	0.83[AMR][1000 genomes]
rs73049954	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73049956	0.88[AMR][1000 genomes]
rs73050322	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73050329	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73050336	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73050338	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73050339	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73050340	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73050349	0.82[EUR][1000 genomes]
rs73050358	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73050366	0.83[AMR][1000 genomes]
rs73050373	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9840225	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25184200-25186200	Enhancers	Fetal Lung	lung
2	chr3:25184600-25185400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:25184600-25185400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:25184600-25185400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:25184600-25185600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:25184600-25187400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:25184800-25185400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:25185000-25186200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:25185200-25186000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:25185200-25186400	Weak transcription	Fetal Stomach	stomach

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