Variant report

Variant	rs55809331
Chromosome Location	chr3:25182217-25182218
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12152294	1.00[AFR][1000 genomes]
rs17517413	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17517778	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17517875	1.00[AFR][1000 genomes]
rs17518622	1.00[AFR][1000 genomes]
rs17576595	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17576629	1.00[AFR][1000 genomes]
rs17576864	1.00[AFR][1000 genomes]
rs17577191	1.00[AFR][1000 genomes]
rs17577540	1.00[AFR][1000 genomes]
rs55864034	1.00[AFR][1000 genomes]
rs56034169	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56127830	1.00[AFR][1000 genomes]
rs56150061	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73042334	1.00[AFR][1000 genomes]
rs73042350	1.00[AFR][1000 genomes]
rs73042352	1.00[AFR][1000 genomes]
rs73044253	1.00[AFR][1000 genomes]
rs73044255	1.00[AFR][1000 genomes]
rs73044259	1.00[AFR][1000 genomes]
rs73044279	1.00[AFR][1000 genomes]
rs73044296	1.00[AFR][1000 genomes]
rs73048404	0.92[AMR][1000 genomes]
rs73048410	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73048413	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73048430	0.83[AMR][1000 genomes]
rs73048442	0.87[AMR][1000 genomes]
rs73048450	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73049954	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs73049956	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73050322	1.00[AFR][1000 genomes]
rs73050329	1.00[AFR][1000 genomes]
rs73050336	1.00[AFR][1000 genomes]
rs73050338	1.00[AFR][1000 genomes]
rs73050339	1.00[AFR][1000 genomes]
rs73050340	1.00[AFR][1000 genomes]
rs73050358	1.00[AFR][1000 genomes]
rs73050366	1.00[AFR][1000 genomes]
rs73050373	1.00[AFR][1000 genomes]
rs73052497	1.00[AFR][1000 genomes]
rs73054326	1.00[AFR][1000 genomes]
rs73054328	1.00[AFR][1000 genomes]
rs9840225	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25175800-25184200	Weak transcription	Fetal Lung	lung

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