Variant report

Variant	rs73048404
Chromosome Location	chr3:25179533-25179534
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17517455	0.87[EUR][1000 genomes]
rs17576595	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17576629	0.83[EUR][1000 genomes]
rs17576864	0.87[EUR][1000 genomes]
rs55750806	0.81[EUR][1000 genomes]
rs55809331	0.92[AMR][1000 genomes]
rs56034169	0.96[AMR][1000 genomes]
rs56150061	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56189892	0.93[EUR][1000 genomes]
rs57259009	0.84[EUR][1000 genomes]
rs73048410	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73048413	0.96[AMR][1000 genomes]
rs73048430	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73048442	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73048447	0.87[EUR][1000 genomes]
rs73049954	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73049956	0.96[AMR][1000 genomes]
rs73050322	0.87[EUR][1000 genomes]
rs73050329	0.87[EUR][1000 genomes]
rs73050336	0.85[EUR][1000 genomes]
rs73050338	0.85[EUR][1000 genomes]
rs73050339	0.85[EUR][1000 genomes]
rs73050340	0.84[EUR][1000 genomes]
rs9840225	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25175800-25184200	Weak transcription	Fetal Lung	lung
2	chr3:25179200-25179600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:25179200-25179600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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