Variant report

Variant	rs73050329
Chromosome Location	chr3:25194522-25194523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12152294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17517413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17517455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17517778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17517875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17518622	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17576595	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17576629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17576864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17577191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17577540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17578294	0.85[EUR][1000 genomes]
rs55750806	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55809331	1.00[AFR][1000 genomes]
rs55864034	1.00[AFR][1000 genomes]
rs56034169	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs56127830	1.00[AFR][1000 genomes]
rs56150061	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56189892	0.93[EUR][1000 genomes]
rs57259009	0.87[EUR][1000 genomes]
rs73042334	1.00[AFR][1000 genomes]
rs73042350	1.00[AFR][1000 genomes]
rs73042352	1.00[AFR][1000 genomes]
rs73044253	1.00[AFR][1000 genomes]
rs73044255	1.00[AFR][1000 genomes]
rs73044259	1.00[AFR][1000 genomes]
rs73044279	1.00[AFR][1000 genomes]
rs73044296	1.00[AFR][1000 genomes]
rs73048404	0.87[EUR][1000 genomes]
rs73048410	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73048413	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73048430	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73048442	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73048447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73048450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73049954	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73049956	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73050322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73050336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73050338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73050339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73050340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73050349	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73050358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73050366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73050373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73052497	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73054309	0.80[EUR][1000 genomes]
rs73054326	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73054328	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9840225	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25191400-25194600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:25191400-25195200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:25192600-25194600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:25192800-25197600	Weak transcription	Brain Angular Gyrus	brain
5	chr3:25192800-25198200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:25192800-25198200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:25193200-25194600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:25193200-25196200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:25193400-25194600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:25193400-25194600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:25193400-25194600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:25193400-25194800	Enhancers	Fetal Brain Male	brain
13	chr3:25193400-25197200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:25193400-25197200	Weak transcription	NH-A	brain
15	chr3:25193400-25197600	Weak transcription	Brain Anterior Caudate	brain
16	chr3:25193400-25197800	Weak transcription	Fetal Stomach	stomach
17	chr3:25193400-25197800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:25193600-25194600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:25193600-25197000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:25193600-25197200	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:25193600-25197400	Weak transcription	NHDF-Ad	bronchial
22	chr3:25193600-25197600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:25193800-25194600	Weak transcription	Right Atrium	heart
24	chr3:25193800-25194800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:25193800-25195000	Enhancers	HUVEC	blood vessel
26	chr3:25193800-25196800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:25193800-25197200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:25193800-25197400	Weak transcription	Osteobl	bone
29	chr3:25194000-25197400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:25194000-25197600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr3:25194000-25197600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:25194000-25211800	Weak transcription	Aorta	Aorta
33	chr3:25194400-25194800	Enhancers	Fetal Heart	heart
34	chr3:25194400-25195400	Enhancers	Fetal Lung	lung
35	chr3:25194400-25196200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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