Variant report
| Variant | rs56189892 |
|---|---|
| Chromosome Location | chr3:25183594-25183595 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:25173033..25175213-chr3:25183319..25185736,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12152294 | 0.85[EUR][1000 genomes] |
| rs17517455 | 0.93[EUR][1000 genomes] |
| rs17517875 | 0.85[EUR][1000 genomes] |
| rs17576595 | 0.93[EUR][1000 genomes] |
| rs17576629 | 0.90[EUR][1000 genomes] |
| rs17576864 | 0.93[EUR][1000 genomes] |
| rs17577191 | 0.85[EUR][1000 genomes] |
| rs55750806 | 0.87[EUR][1000 genomes] |
| rs56150061 | 0.99[EUR][1000 genomes] |
| rs57259009 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73048404 | 0.93[EUR][1000 genomes] |
| rs73048410 | 0.96[EUR][1000 genomes] |
| rs73048413 | 0.81[EUR][1000 genomes] |
| rs73048430 | 0.88[EUR][1000 genomes] |
| rs73048442 | 0.96[EUR][1000 genomes] |
| rs73048447 | 0.93[EUR][1000 genomes] |
| rs73049954 | 0.95[EUR][1000 genomes] |
| rs73050322 | 0.93[EUR][1000 genomes] |
| rs73050329 | 0.93[EUR][1000 genomes] |
| rs73050336 | 0.92[EUR][1000 genomes] |
| rs73050338 | 0.92[EUR][1000 genomes] |
| rs73050339 | 0.92[EUR][1000 genomes] |
| rs73050340 | 0.91[EUR][1000 genomes] |
| rs73050349 | 0.86[EUR][1000 genomes] |
| rs73050358 | 0.85[EUR][1000 genomes] |
| rs73050373 | 0.85[EUR][1000 genomes] |
| rs9840225 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013446 | chr3:25176609-25221334 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:25175800-25184200 | Weak transcription | Fetal Lung | lung |
