Variant report

Variant	rs73048442
Chromosome Location	chr3:25186624-25186625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12152294	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17517413	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17517455	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17517778	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17517875	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17518622	0.83[EUR][1000 genomes]
rs17576595	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17576629	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17576864	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17577191	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17577540	0.87[AMR][1000 genomes]
rs17578294	0.83[EUR][1000 genomes]
rs55750806	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55809331	0.87[AMR][1000 genomes]
rs56034169	0.92[AMR][1000 genomes]
rs56150061	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56189892	0.96[EUR][1000 genomes]
rs57259009	0.89[EUR][1000 genomes]
rs73048404	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73048410	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73048413	0.92[AMR][1000 genomes]
rs73048430	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73048447	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73048450	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73049954	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73049956	0.92[AMR][1000 genomes]
rs73050322	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73050329	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73050336	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73050338	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73050339	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73050340	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73050349	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73050358	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73050366	0.87[AMR][1000 genomes]
rs73050373	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73052497	0.83[EUR][1000 genomes]
rs73054328	0.83[EUR][1000 genomes]
rs9840225	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25184600-25187400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:25185600-25192200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:25186000-25186800	Enhancers	Colon Smooth Muscle	Colon
4	chr3:25186200-25186800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:25186600-25186800	Flanking Active TSS	Fetal Lung	lung
6	chr3:25186600-25191800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links