Variant report

Variant	rs17597283
Chromosome Location	chr15:92613218-92613219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92611564..92613241-chr15:92617063..92619542,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11857430	0.94[EUR][1000 genomes]
rs13379527	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13379781	0.94[EUR][1000 genomes]
rs28665051	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56798930	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58060470	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58304882	0.94[EUR][1000 genomes]
rs61703755	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66521580	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67416641	0.94[EUR][1000 genomes]
rs67840341	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7171275	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72757434	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8040836	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs963344	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92609800-92616000	Enhancers	Brain Cingulate Gyrus	brain
2	chr15:92610400-92613800	Enhancers	Brain Hippocampus Middle	brain
3	chr15:92610400-92614200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:92610800-92615400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr15:92610800-92620400	Enhancers	Brain Substantia Nigra	brain
6	chr15:92611000-92613600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr15:92611000-92615200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr15:92611200-92613600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr15:92611200-92614800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr15:92611200-92615200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:92611400-92613600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:92611400-92613800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:92611600-92614000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:92611800-92613400	Enhancers	Fetal Thymus	thymus
15	chr15:92611800-92615200	Enhancers	Left Ventricle	heart
16	chr15:92612000-92613400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:92612000-92613400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:92612000-92613400	Enhancers	Esophagus	oesophagus
19	chr15:92612000-92613400	Enhancers	Lung	lung
20	chr15:92612000-92613400	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr15:92612000-92613400	Enhancers	Spleen	Spleen
22	chr15:92612000-92613600	Enhancers	HMEC	breast
23	chr15:92612200-92614400	Weak transcription	Fetal Brain Male	brain
24	chr15:92612200-92614800	Weak transcription	Fetal Brain Female	brain
25	chr15:92612200-92616200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:92612400-92613400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:92612400-92613600	Flanking Active TSS	GM12878-XiMat	blood
28	chr15:92612400-92615000	Enhancers	Right Ventricle	heart
29	chr15:92612600-92613400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr15:92612600-92613400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr15:92612600-92613400	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr15:92612600-92613600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr15:92612600-92613600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:92612600-92613600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:92612600-92613600	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr15:92612600-92613600	Flanking Active TSS	A549	lung
37	chr15:92612600-92613600	Flanking Active TSS	NHEK	skin
38	chr15:92612600-92613800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr15:92612600-92613800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:92612600-92613800	Enhancers	Stomach Mucosa	stomach
41	chr15:92612800-92613400	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr15:92612800-92613400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:92612800-92613400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr15:92612800-92613400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr15:92612800-92613400	Active TSS	Colonic Mucosa	Colon
46	chr15:92612800-92613400	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr15:92612800-92613400	Enhancers	Small Intestine	intestine
48	chr15:92612800-92613400	Flanking Active TSS	Hela-S3	cervix
49	chr15:92612800-92613400	Flanking Active TSS	HSMM	muscle
50	chr15:92612800-92613400	Flanking Active TSS	NH-A	brain

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