Variant report

Variant	rs7171275
Chromosome Location	chr15:92601966-92601967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92582522..92585507-chr15:92601310..92602850,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11857430	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13379527	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13379781	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17597283	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28665051	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56798930	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58060470	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58304882	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61703755	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66521580	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67416641	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67840341	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72757434	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8040836	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs963344	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7171275	SLCO3A1	cis	cerebellum	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:92593800-92602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:92594200-92602200	Weak transcription	Spleen	Spleen
5	chr15:92594200-92610800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr15:92599200-92603000	Enhancers	Brain Cingulate Gyrus	brain
7	chr15:92599200-92603400	Enhancers	Brain Hippocampus Middle	brain
8	chr15:92599800-92602800	Enhancers	Right Atrium	heart
9	chr15:92599800-92603000	Enhancers	Brain Substantia Nigra	brain
10	chr15:92599800-92603200	Enhancers	Brain Angular Gyrus	brain
11	chr15:92599800-92603800	Enhancers	Right Ventricle	heart
12	chr15:92600000-92603000	Enhancers	Left Ventricle	heart
13	chr15:92600000-92603200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr15:92600000-92605200	Enhancers	Fetal Heart	heart
15	chr15:92600200-92603400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:92600600-92602000	Weak transcription	Fetal Brain Female	brain
17	chr15:92600600-92602200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:92600600-92605000	Weak transcription	Aorta	Aorta
19	chr15:92600600-92605000	Weak transcription	Ovary	ovary
20	chr15:92600800-92610200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:92601000-92602200	Weak transcription	Lung	lung
22	chr15:92601200-92602600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:92601200-92603200	Enhancers	Fetal Brain Male	brain
24	chr15:92601600-92602800	Bivalent Enhancer	Placenta	Placenta
25	chr15:92601600-92603200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr15:92601600-92603400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:92601600-92603400	Enhancers	Esophagus	oesophagus
28	chr15:92601800-92603000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:92601800-92603000	Enhancers	Psoas Muscle	Psoas
30	chr15:92601800-92603200	Enhancers	Pancreas	Pancrea
31	chr15:92601800-92603400	Enhancers	HMEC	breast

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