Variant report

Variant	rs67840341
Chromosome Location	chr15:92603530-92603531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11857430	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13379527	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13379781	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17597283	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28665051	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56798930	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58060470	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58304882	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61703755	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66521580	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67416641	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7171275	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72757434	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040836	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs963344	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:92594200-92610800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:92599800-92603800	Enhancers	Right Ventricle	heart
5	chr15:92600000-92605200	Enhancers	Fetal Heart	heart
6	chr15:92600600-92605000	Weak transcription	Aorta	Aorta
7	chr15:92600600-92605000	Weak transcription	Ovary	ovary
8	chr15:92600800-92610200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr15:92602000-92603600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:92602000-92603800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:92602800-92604800	Weak transcription	Right Atrium	heart
12	chr15:92603000-92604200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:92603000-92604200	Weak transcription	Brain Substantia Nigra	brain
14	chr15:92603000-92604800	Weak transcription	Left Ventricle	heart
15	chr15:92603000-92604800	Weak transcription	Psoas Muscle	Psoas
16	chr15:92603000-92605600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:92603200-92604400	Weak transcription	Brain Angular Gyrus	brain
18	chr15:92603200-92604400	Weak transcription	Fetal Brain Male	brain
19	chr15:92603200-92604400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:92603200-92604800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:92603200-92604800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:92603200-92605000	Weak transcription	Spleen	Spleen
23	chr15:92603200-92610000	Weak transcription	Lung	lung
24	chr15:92603400-92604400	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:92603400-92605000	Weak transcription	Esophagus	oesophagus
26	chr15:92603400-92605200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:92603400-92605800	Weak transcription	Fetal Brain Female	brain
28	chr15:92603400-92611400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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