Variant report

Variant	rs58304882
Chromosome Location	chr15:92592528-92592529
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92582922..92584573-chr15:92591529..92593824,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11857430	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13379527	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13379781	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17597283	0.94[EUR][1000 genomes]
rs28665051	0.93[EUR][1000 genomes]
rs56798930	0.96[EUR][1000 genomes]
rs58060470	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61703755	0.97[EUR][1000 genomes]
rs66521580	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67416641	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67840341	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7171275	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72757434	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8040836	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs963344	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1049753	chr15:92587172-92600399	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92581000-92593400	Weak transcription	Aorta	Aorta
2	chr15:92584600-92592600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:92585400-92601200	Weak transcription	Fetal Brain Male	brain
4	chr15:92585800-92592600	Weak transcription	Brain Anterior Caudate	brain
5	chr15:92586000-92593200	Weak transcription	Gastric	stomach
6	chr15:92588000-92593000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:92588000-92593400	Weak transcription	NHEK	skin
8	chr15:92588200-92592600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:92588200-92593000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:92588200-92593200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:92588200-92593600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr15:92590000-92592600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:92591000-92595600	Enhancers	Left Ventricle	heart
14	chr15:92591000-92595800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr15:92591000-92595800	Enhancers	Brain Substantia Nigra	brain
16	chr15:92591000-92595800	Enhancers	Right Atrium	heart
17	chr15:92591200-92595800	Enhancers	Brain Cingulate Gyrus	brain
18	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:92591400-92592600	Weak transcription	Brain Angular Gyrus	brain
20	chr15:92591400-92594600	Enhancers	Esophagus	oesophagus
21	chr15:92591400-92595600	Enhancers	Brain Hippocampus Middle	brain
22	chr15:92591600-92600200	Weak transcription	Ovary	ovary
23	chr15:92592200-92593600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:92592200-92594200	Enhancers	Spleen	Spleen
25	chr15:92592200-92594600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:92592200-92595600	Enhancers	Fetal Heart	heart
27	chr15:92592400-92593000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr15:92592400-92594200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr15:92592400-92594800	Enhancers	Lung	lung
30	chr15:92592400-92595400	Enhancers	Right Ventricle	heart

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