Variant report

Variant	rs1764470
Chromosome Location	chr1:93488443-93488444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93485980..93488495-chr1:93489742..93491453,2	K562	blood:
2	chr1:93487223..93489014-chr1:93543210..93544783,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10747455	1.00[AMR][1000 genomes]
rs2492899	0.87[AFR][1000 genomes]
rs2492900	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2815405	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4345812	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4361994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4366327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4367789	1.00[AMR][1000 genomes]
rs4436402	1.00[AMR][1000 genomes]
rs4466666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4491068	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs473946	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4847228	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs508180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs508787	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs521360	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs537410	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs541676	1.00[AMR][1000 genomes]
rs545357	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs559455	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs559595	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574550	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs587589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs593214	1.00[AMR][1000 genomes]
rs595783	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs596817	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs614073	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs617683	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs634127	1.00[AMR][1000 genomes]
rs640481	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs644020	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6604036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs662881	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6661632	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6690825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs674982	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs678537	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs770880	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs811286	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv870775	chr1:93481640-93543119	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93474200-93490600	Weak transcription	K562	blood
2	chr1:93480400-93491000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:93486800-93494000	Enhancers	Dnd41	blood
4	chr1:93487800-93489000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:93488000-93504200	Enhancers	Fetal Thymus	thymus
6	chr1:93488400-93490600	Weak transcription	Thymus	Thymus

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