Variant report
Variant | rs770880 |
---|---|
Chromosome Location | chr1:93472060-93472061 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10747455 | 1.00[AMR][1000 genomes] |
rs1764470 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2492900 | 1.00[AMR][1000 genomes] |
rs2815405 | 1.00[AMR][1000 genomes] |
rs4345812 | 1.00[AMR][1000 genomes] |
rs4361994 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs4366327 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs4367789 | 1.00[AMR][1000 genomes] |
rs4436402 | 1.00[AMR][1000 genomes] |
rs4466666 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs4491068 | 1.00[AMR][1000 genomes] |
rs473946 | 1.00[AMR][1000 genomes] |
rs4847228 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs508180 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs508787 | 1.00[AMR][1000 genomes] |
rs521360 | 1.00[AMR][1000 genomes] |
rs537410 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs541676 | 1.00[AMR][1000 genomes] |
rs545357 | 1.00[AMR][1000 genomes] |
rs559455 | 1.00[AMR][1000 genomes] |
rs559595 | 1.00[AMR][1000 genomes] |
rs574550 | 1.00[AMR][1000 genomes] |
rs587589 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs593214 | 1.00[AMR][1000 genomes] |
rs595783 | 1.00[AMR][1000 genomes] |
rs596817 | 1.00[AMR][1000 genomes] |
rs614073 | 1.00[AMR][1000 genomes] |
rs617683 | 1.00[AMR][1000 genomes] |
rs634127 | 1.00[AMR][1000 genomes] |
rs640481 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs644020 | 1.00[AMR][1000 genomes] |
rs6604036 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs662881 | 1.00[AMR][1000 genomes] |
rs6661632 | 1.00[AMR][1000 genomes] |
rs6690825 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs674982 | 1.00[AMR][1000 genomes] |
rs678537 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs811286 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1008602 | chr1:93176811-93640808 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
2 | nsv830614 | chr1:93465978-93678700 | Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:93467000-93474600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
2 | chr1:93471600-93478000 | Weak transcription | GM12878-XiMat | blood |