Variant report

Variant	rs4491068
Chromosome Location	chr1:93495993-93495994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:93495816-93496028	HepG2	liver:	n/a	chr1:93495973-93495985

Variant related genes	Relation type
ENSG00000251837	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10747455	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1764470	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2492899	1.00[AFR][1000 genomes]
rs2492900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2815405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4345812	1.00[AMR][1000 genomes]
rs4361994	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4366327	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4367789	1.00[AMR][1000 genomes]
rs4436402	1.00[AMR][1000 genomes]
rs4466666	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs473946	1.00[AMR][1000 genomes]
rs4847228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs508180	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs508787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs521360	1.00[AMR][1000 genomes]
rs537410	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs541676	1.00[AMR][1000 genomes]
rs545357	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs559455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs559595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs587589	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs593214	1.00[AMR][1000 genomes]
rs595783	1.00[AMR][1000 genomes]
rs596817	1.00[AMR][1000 genomes]
rs614073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs617683	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs634127	1.00[AMR][1000 genomes]
rs640481	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs644020	1.00[AMR][1000 genomes]
rs6604036	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs662881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6661632	1.00[AMR][1000 genomes]
rs6690825	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs674982	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs678537	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs770880	1.00[AMR][1000 genomes]
rs811286	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv870775	chr1:93481640-93543119	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93488000-93504200	Enhancers	Fetal Thymus	thymus
2	chr1:93492400-93497600	Enhancers	Thymus	Thymus
3	chr1:93493600-93496000	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr1:93493600-93496800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr1:93493800-93496200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr1:93494000-93496200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:93494000-93496200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:93494200-93496400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:93494800-93496000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr1:93494800-93498800	Enhancers	Dnd41	blood
11	chr1:93495200-93498400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr1:93495400-93498400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr1:93495400-93498400	Weak transcription	GM12878-XiMat	blood
14	chr1:93495600-93498600	Weak transcription	Primary B cells from cord blood	blood
15	chr1:93495600-93498600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:93495800-93504200	Weak transcription	Primary T cells from cord blood	blood

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