Variant report
| Variant | rs541676 |
|---|---|
| Chromosome Location | chr1:93512499-93512500 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:93507541..93509653-chr1:93511685..93513516,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10747455 | 1.00[AMR][1000 genomes] |
| rs1764470 | 1.00[AMR][1000 genomes] |
| rs2492900 | 1.00[AMR][1000 genomes] |
| rs2815405 | 1.00[AMR][1000 genomes] |
| rs4345812 | 1.00[AMR][1000 genomes] |
| rs4361994 | 1.00[AMR][1000 genomes] |
| rs4366327 | 1.00[AMR][1000 genomes] |
| rs4367789 | 1.00[AMR][1000 genomes] |
| rs4436402 | 1.00[AMR][1000 genomes] |
| rs4466666 | 1.00[AMR][1000 genomes] |
| rs4491068 | 1.00[AMR][1000 genomes] |
| rs473946 | 1.00[AMR][1000 genomes] |
| rs4847228 | 1.00[AMR][1000 genomes] |
| rs508180 | 1.00[AMR][1000 genomes] |
| rs508787 | 1.00[AMR][1000 genomes] |
| rs521360 | 1.00[AMR][1000 genomes] |
| rs537410 | 1.00[AMR][1000 genomes] |
| rs545357 | 1.00[AMR][1000 genomes] |
| rs559455 | 1.00[AMR][1000 genomes] |
| rs559595 | 1.00[AMR][1000 genomes] |
| rs574550 | 1.00[AMR][1000 genomes] |
| rs587589 | 1.00[AMR][1000 genomes] |
| rs593214 | 1.00[AMR][1000 genomes] |
| rs595783 | 1.00[AMR][1000 genomes] |
| rs596817 | 1.00[AMR][1000 genomes] |
| rs614073 | 1.00[AMR][1000 genomes] |
| rs617683 | 1.00[AMR][1000 genomes] |
| rs634127 | 1.00[AMR][1000 genomes] |
| rs640481 | 1.00[AMR][1000 genomes] |
| rs644020 | 1.00[AMR][1000 genomes] |
| rs6604036 | 1.00[AMR][1000 genomes] |
| rs662881 | 1.00[AMR][1000 genomes] |
| rs6661632 | 1.00[AMR][1000 genomes] |
| rs6690825 | 1.00[AMR][1000 genomes] |
| rs674982 | 1.00[AMR][1000 genomes] |
| rs678537 | 1.00[AMR][1000 genomes] |
| rs770880 | 1.00[AMR][1000 genomes] |
| rs811286 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008602 | chr1:93176811-93640808 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv830614 | chr1:93465978-93678700 | Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 3 | nsv870775 | chr1:93481640-93543119 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv946092 | chr1:93511551-93522478 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:93508400-93513200 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
