Variant report

Variant	rs17695912
Chromosome Location	chr19:52490280-52490281
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr19:52489981-52490429	GM12878	blood:	n/a	n/a
2	SP1	chr19:52489716-52490450	A549	lung:	n/a	n/a
3	RUNX3	chr19:52489532-52490446	GM12878	blood:	n/a	n/a
4	E2F4	chr19:52490032-52490380	MCF10A-Er-Src	breast:	n/a	n/a
5	MYC	chr19:52489884-52490347	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr19:52489577-52490389	GM12891	blood:	n/a	n/a
7	CHD2	chr19:52489953-52490386	Hela-S3	cervix:	n/a	n/a
8	SP4	chr19:52489887-52490314	H1-hESC	embryonic stem cell:	n/a	n/a
9	MYC	chr19:52489582-52490405	NB4	blood:	n/a	n/a
10	POLR2A	chr19:52489622-52490369	HUVEC	blood vessel:	n/a	n/a
11	ZNF143	chr19:52489859-52490420	GM12878	blood:	n/a	n/a
12	TAF1	chr19:52489914-52490306	SK-N-SH	brain:	n/a	n/a
13	ELF1	chr19:52489661-52490347	GM12878	blood:	n/a	chr19:52490062-52490075
14	MAX	chr19:52489674-52490327	H1-hESC	embryonic stem cell:	n/a	n/a
15	EGR1	chr19:52489888-52490414	MCF-7	breast:	n/a	n/a
16	POLR2A	chr19:52489790-52490402	GM12892	blood:	n/a	n/a
17	BRCA1	chr19:52489913-52490386	Hela-S3	cervix:	n/a	n/a
18	GABPA	chr19:52489870-52490355	MCF-7	breast:	n/a	n/a
19	HCFC1	chr19:52489509-52490669	Hela-S3	cervix:	n/a	n/a
20	ELF1	chr19:52489709-52490413	SK-N-SH	brain:	n/a	chr19:52490062-52490075
21	SIX5	chr19:52489902-52490386	H1-hESC	embryonic stem cell:	n/a	n/a
22	SIN3AK20	chr19:52489672-52490479	MCF-7	breast:	n/a	n/a
23	SIN3A	chr19:52489617-52490373	H1-hESC	embryonic stem cell:	n/a	n/a
24	SMC3	chr19:52489957-52490464	Hela-S3	cervix:	n/a	n/a
25	EGR1	chr19:52489827-52490473	HCT-116	colon:	n/a	n/a
26	ELK4	chr19:52489625-52490288	Hela-S3	cervix:	n/a	n/a
27	BCL3	chr19:52489897-52490392	A549	lung:	n/a	n/a
28	MAFF	chr19:52490009-52490326	HepG2	liver:	n/a	n/a
29	RCOR1	chr19:52489664-52490388	HepG2	liver:	n/a	n/a
30	KAP1	chr19:52489734-52490408	HEK293	kidney:	n/a	n/a
31	GABPA	chr19:52489878-52490419	SK-N-SH	brain:	n/a	n/a
32	MAX	chr19:52489255-52490367	K562	blood:	n/a	n/a
33	ETS1	chr19:52489889-52490414	GM12878	blood:	n/a	n/a
34	REST	chr19:52489981-52490287	SK-N-SH	brain:	n/a	n/a
35	POLR2A	chr19:52489831-52490308	HepG2	liver:	n/a	n/a
36	TBP	chr19:52489888-52490408	H1-hESC	embryonic stem cell:	n/a	n/a
37	SPI1	chr19:52489799-52490322	HL-60	blood:	n/a	n/a
38	JUN	chr19:52489937-52490283	K562	blood:	n/a	n/a
39	SP1	chr19:52489925-52490390	GM12878	blood:	n/a	n/a
40	POLR2A	chr19:52489775-52490313	PANC-1	pancreas:	n/a	n/a
41	GTF2F1	chr19:52489951-52490463	Hela-S3	cervix:	n/a	n/a
42	YY1	chr19:52489986-52490489	GM12878	blood:	n/a	chr19:52490191-52490201 chr19:52490224-52490236 chr19:52490179-52490201 chr19:52490227-52490236 chr19:52490225-52490247
43	SIN3AK20	chr19:52489851-52490351	SK-N-SH	brain:	n/a	n/a
44	TEAD4	chr19:52489815-52490441	K562	blood:	n/a	n/a
45	TAF1	chr19:52489902-52490388	H1-hESC	embryonic stem cell:	n/a	n/a
46	TAF1	chr19:52489807-52490446	GM12878	blood:	n/a	n/a
47	CREB1	chr19:52490039-52490400	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr19:52489870-52490383	H1-neurons	neurons:	n/a	n/a
49	YY1	chr19:52489484-52490669	A549	lung:	n/a	chr19:52490191-52490201 chr19:52490224-52490236 chr19:52490179-52490201 chr19:52490227-52490236 chr19:52490225-52490247
50	MYBL2	chr19:52489810-52490485	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:52489566..52491908-chr19:52529966..52531753,2	MCF-7	breast:

Variant related genes	Relation type
ZNF350	TF binding region
ENSG00000142556	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16983336	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17695888	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17695936	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17695996	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56091488	1.00[ASN][1000 genomes]
rs61656948	1.00[ASN][1000 genomes]
rs6509616	1.00[ASN][1000 genomes]
rs7260097	1.00[ASN][1000 genomes]
rs73052010	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73052036	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73052043	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73065055	0.83[EUR][1000 genomes]
rs73067001	0.97[EUR][1000 genomes]
rs7343140	1.00[ASN][1000 genomes]
rs73934728	1.00[ASN][1000 genomes]
rs749618	1.00[ASN][1000 genomes]
rs8102713	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758767	chr19:51991896-52604625	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	578 gene(s)	inside rSNPs	diseases
2	nsv1065410	chr19:52103914-52889530	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	596 gene(s)	inside rSNPs	diseases
3	esv34938	chr19:52227916-52630935	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
4	nsv1061029	chr19:52249900-52614747	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	esv2757699	chr19:52259571-52604625	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	esv2751797	chr19:52259588-52604625	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv1061100	chr19:52259839-52617390	Strong transcription Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	nsv1060519	chr19:52270087-52628611	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
9	nsv579998	chr19:52270942-52613105	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv1056146	chr19:52271018-52617390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
11	nsv1057485	chr19:52271309-52614747	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
12	nsv870043	chr19:52271348-52619860	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
13	nsv534202	chr19:52272356-52627403	Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
14	nsv1059263	chr19:52273257-52607771	ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv1057290	chr19:52273257-52614747	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
16	nsv1064732	chr19:52273257-52617390	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
17	nsv1059924	chr19:52273257-52628611	Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
18	nsv1057217	chr19:52283498-52617132	Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
19	nsv1062154	chr19:52283498-52617390	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
20	nsv1060988	chr19:52283498-52621644	Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
21	nsv1058292	chr19:52284671-52614747	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
22	nsv1063940	chr19:52284671-52617390	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
23	esv2751798	chr19:52285788-52604625	ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
24	esv2751799	chr19:52285788-52604625	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
25	esv2751800	chr19:52285788-52604625	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
26	esv2751801	chr19:52285788-52604625	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
27	esv34502	chr19:52285829-52604625	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
28	nsv458734	chr19:52287452-52601399	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
29	nsv579999	chr19:52287452-52601399	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
30	nsv458735	chr19:52287452-52607765	Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
31	nsv458736	chr19:52287452-52607765	ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
32	nsv580000	chr19:52287452-52607765	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
33	nsv1055523	chr19:52288763-52578312	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
34	nsv544055	chr19:52288763-52578312	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
35	nsv916346	chr19:52288798-52578302	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
36	nsv1065600	chr19:52295063-52500079	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
37	nsv544056	chr19:52295063-52500079	Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
38	nsv1059596	chr19:52295063-52553755	ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
39	nsv544057	chr19:52295063-52553755	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
40	nsv1064316	chr19:52295063-52593062	ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
41	nsv544058	chr19:52295063-52593062	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
42	nsv580001	chr19:52301660-52517238	Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
43	nsv580002	chr19:52304146-52617298	Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
44	nsv458737	chr19:52306547-52601399	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
45	nsv580003	chr19:52306547-52601399	Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
46	nsv458738	chr19:52306547-52621644	Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
47	nsv580004	chr19:52306547-52621644	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
48	nsv531306	chr19:52327602-52616696	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
49	esv2758505	chr19:52346092-52533826	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
50	nsv534124	chr19:52368797-52616696	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52486600-52490600	ZNF genes & repeats	GM12878-XiMat	blood
2	chr19:52488000-52490600	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr19:52488000-52491200	Active TSS	Duodenum Mucosa	Duodenum
4	chr19:52488200-52490600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr19:52488200-52490600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:52488400-52490600	Active TSS	Fetal Lung	lung
7	chr19:52488400-52490600	ZNF genes & repeats	A549	lung
8	chr19:52488400-52490600	Active TSS	NHDF-Ad	bronchial
9	chr19:52488600-52490400	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr19:52488600-52490400	Active TSS	Fetal Brain Female	brain
11	chr19:52488600-52490400	Active TSS	HSMM	muscle
12	chr19:52488600-52490600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr19:52488600-52490600	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr19:52488600-52490600	Active TSS	Primary T cells from cord blood	blood
15	chr19:52488600-52490600	Active TSS	Colon Smooth Muscle	Colon
16	chr19:52488600-52490600	Active TSS	Psoas Muscle	Psoas
17	chr19:52488600-52490600	Active TSS	Rectal Mucosa Donor 31	rectum
18	chr19:52488600-52490600	Active TSS	Stomach Smooth Muscle	stomach
19	chr19:52488600-52490600	Active TSS	HSMMtube	muscle
20	chr19:52488600-52491200	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr19:52488800-52490400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr19:52488800-52490400	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr19:52488800-52490400	Active TSS	Osteobl	bone
24	chr19:52488800-52490600	Active TSS	H1 Cell Line	embryonic stem cell
25	chr19:52488800-52490600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:52488800-52490600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr19:52488800-52490600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr19:52488800-52490600	Active TSS	Brain Cingulate Gyrus	brain
29	chr19:52488800-52490600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr19:52488800-52490600	Active TSS	Fetal Kidney	kidney
31	chr19:52488800-52490600	Active TSS	Hela-S3	cervix
32	chr19:52488800-52490600	Active TSS	K562	blood
33	chr19:52488800-52490600	Active TSS	NHLF	lung
34	chr19:52489000-52490400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr19:52489000-52490400	Active TSS	Brain Angular Gyrus	brain
36	chr19:52489000-52490400	Active TSS	Brain Substantia Nigra	brain
37	chr19:52489000-52490400	Active TSS	Fetal Stomach	stomach
38	chr19:52489000-52490400	Active TSS	Gastric	stomach
39	chr19:52489000-52490400	Active TSS	Pancreas	Pancrea
40	chr19:52489000-52490400	Active TSS	HMEC	breast
41	chr19:52489000-52490400	Active TSS	NHEK	skin
42	chr19:52489000-52490600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr19:52489000-52490600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr19:52489000-52490600	Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr19:52489000-52490600	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr19:52489000-52490600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr19:52489000-52490600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr19:52489000-52490600	Active TSS	Muscle Satellite Cultured Cells	--
49	chr19:52489000-52490600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr19:52489000-52490600	Active TSS	Brain Anterior Caudate	brain

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