Variant report

Variant rs56091488
Chromosome Location chr19:52530082-52530083
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:52514000-52530400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr19:52515200-52530800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr19:52515400-52530800 ZNF genes & repeats Primary B cells from cord blood blood
4 chr19:52515400-52546400 ZNF genes & repeats Liver Liver
5 chr19:52517400-52530200 ZNF genes & repeats Ovary ovary
6 chr19:52517400-52530600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr19:52517400-52530800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
8 chr19:52517600-52530200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
9 chr19:52517600-52530400 ZNF genes & repeats Primary hematopoietic stem cells blood
10 chr19:52517600-52530800 ZNF genes & repeats GM12878-XiMat blood
11 chr19:52517800-52530200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
12 chr19:52517800-52530600 ZNF genes & repeats Fetal Muscle Leg muscle
13 chr19:52518600-52530600 ZNF genes & repeats Rectal Mucosa Donor 31 rectum
14 chr19:52518800-52530600 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
15 chr19:52519000-52530200 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
16 chr19:52519000-52530200 ZNF genes & repeats Aorta Aorta
17 chr19:52519000-52530800 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
18 chr19:52519000-52531000 ZNF genes & repeats Fetal Intestine Large intestine
19 chr19:52519200-52530200 ZNF genes & repeats Primary T cells fromperipheralblood blood
20 chr19:52519200-52530200 ZNF genes & repeats Primary mononuclear cells fromperipheralblood Blood
21 chr19:52519200-52532200 ZNF genes & repeats Lung lung
22 chr19:52520400-52530400 ZNF genes & repeats Fetal Stomach stomach
23 chr19:52520600-52530800 ZNF genes & repeats Fetal Intestine Small intestine
24 chr19:52525400-52530800 Weak transcription ES-WA7 Cell Line embryonic stem cell
25 chr19:52525800-52531200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr19:52526000-52530800 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr19:52526600-52530400 Strong transcription ES-I3 Cell Line embryonic stem cell
28 chr19:52527400-52530200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr19:52527400-52530400 Weak transcription Fetal Heart heart
30 chr19:52527400-52530600 Weak transcription HUVEC blood vessel
31 chr19:52527600-52530400 Weak transcription Colon Smooth Muscle Colon
32 chr19:52528000-52530200 Weak transcription Primary T killer memory cells from peripheral blood blood
33 chr19:52528200-52531000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
34 chr19:52528800-52530400 Weak transcription Primary neutrophils fromperipheralblood blood
35 chr19:52528800-52530400 Weak transcription Rectal Smooth Muscle rectum
36 chr19:52528800-52530600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr19:52528800-52531200 Weak transcription Esophagus oesophagus
38 chr19:52529000-52530200 ZNF genes & repeats Foreskin Fibroblast Primary Cells skin01 Skin
39 chr19:52529000-52530200 Weak transcription Pancreatic Islets Pancreatic Islet
40 chr19:52529000-52530400 Strong transcription HSMM muscle
41 chr19:52529200-52530400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr19:52529200-52530400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr19:52529200-52530400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr19:52529200-52530400 Weak transcription Brain Anterior Caudate brain
45 chr19:52529200-52530400 Weak transcription Colonic Mucosa Colon
46 chr19:52529200-52530400 Weak transcription HSMMtube muscle
47 chr19:52529200-52530400 Weak transcription Osteobl bone
48 chr19:52529200-52530600 Weak transcription Psoas Muscle Psoas
49 chr19:52529400-52530200 Weak transcription Primary T helper naive cells fromperipheralblood blood
50 chr19:52529400-52530200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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