Variant report

Variant rs17695888
Chromosome Location chr19:52489741-52489742
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:52486600-52490600 ZNF genes & repeats GM12878-XiMat blood
2 chr19:52488000-52490600 Active TSS HUES48 Cell Line embryonic stem cell
3 chr19:52488000-52491200 Active TSS Duodenum Mucosa Duodenum
4 chr19:52488200-52490600 Active TSS ES-I3 Cell Line embryonic stem cell
5 chr19:52488200-52490600 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr19:52488400-52490200 Transcr. at gene 5' and 3' Dnd41 blood
7 chr19:52488400-52490600 Active TSS Fetal Lung lung
8 chr19:52488400-52490600 ZNF genes & repeats A549 lung
9 chr19:52488400-52490600 Active TSS NHDF-Ad bronchial
10 chr19:52488600-52489800 Flanking Active TSS Adipose Nuclei Adipose
11 chr19:52488600-52490200 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr19:52488600-52490400 Active TSS iPS-20b Cell Line embryonic stem cell
13 chr19:52488600-52490400 Active TSS Fetal Brain Female brain
14 chr19:52488600-52490400 Active TSS HSMM muscle
15 chr19:52488600-52490600 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
16 chr19:52488600-52490600 Active TSS HUES64 Cell Line embryonic stem cell
17 chr19:52488600-52490600 Active TSS Primary T cells from cord blood blood
18 chr19:52488600-52490600 Active TSS Colon Smooth Muscle Colon
19 chr19:52488600-52490600 Active TSS Psoas Muscle Psoas
20 chr19:52488600-52490600 Active TSS Rectal Mucosa Donor 31 rectum
21 chr19:52488600-52490600 Active TSS Stomach Smooth Muscle stomach
22 chr19:52488600-52490600 Active TSS HSMMtube muscle
23 chr19:52488600-52491200 Active TSS Brain Inferior Temporal Lobe brain
24 chr19:52488800-52489800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
25 chr19:52488800-52489800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr19:52488800-52490000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr19:52488800-52490200 Active TSS iPS-18 Cell Line embryonic stem cell
28 chr19:52488800-52490400 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
29 chr19:52488800-52490400 Active TSS Pancreatic Islets Pancreatic Islet
30 chr19:52488800-52490400 Active TSS Osteobl bone
31 chr19:52488800-52490600 Active TSS H1 Cell Line embryonic stem cell
32 chr19:52488800-52490600 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr19:52488800-52490600 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
34 chr19:52488800-52490600 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr19:52488800-52490600 Active TSS Brain Cingulate Gyrus brain
36 chr19:52488800-52490600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
37 chr19:52488800-52490600 Active TSS Fetal Kidney kidney
38 chr19:52488800-52490600 Active TSS Hela-S3 cervix
39 chr19:52488800-52490600 Active TSS K562 blood
40 chr19:52488800-52490600 Active TSS NHLF lung
41 chr19:52489000-52489800 Flanking Active TSS Primary monocytes fromperipheralblood blood
42 chr19:52489000-52489800 Flanking Active TSS Primary T cells fromperipheralblood blood
43 chr19:52489000-52489800 Active TSS Primary hematopoietic stem cells short term culture blood
44 chr19:52489000-52489800 Flanking Active TSS Fetal Muscle Leg muscle
45 chr19:52489000-52490200 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
46 chr19:52489000-52490200 Active TSS Breast Myoepithelial Primary Cells Breast
47 chr19:52489000-52490200 Active TSS Primary T helper cells PMA-I stimulated --
48 chr19:52489000-52490200 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
49 chr19:52489000-52490200 Active TSS Fetal Intestine Small intestine
50 chr19:52489000-52490200 Active TSS Placenta Placenta

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