Variant report

Variant	rs17722756
Chromosome Location	chr5:100137260-100137261
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17159001	0.89[EUR][1000 genomes]
rs17720901	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17721341	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17721790	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17722713	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17723146	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17725086	0.85[AMR][1000 genomes]
rs17725882	0.85[AMR][1000 genomes]
rs17726376	0.85[AMR][1000 genomes]
rs17776515	0.85[EUR][1000 genomes]
rs17776916	0.85[EUR][1000 genomes]
rs17777079	0.89[EUR][1000 genomes]
rs17777349	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17778120	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778217	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778313	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778440	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778487	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778598	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778786	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17779305	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17779694	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17779731	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17780072	0.85[AMR][1000 genomes]
rs17780121	0.85[AMR][1000 genomes]
rs17780854	0.85[AMR][1000 genomes]
rs17780992	0.85[AMR][1000 genomes]
rs17781289	0.85[AMR][1000 genomes]
rs17782650	0.85[AMR][1000 genomes]
rs57652761	0.85[EUR][1000 genomes]
rs6866516	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73777435	0.85[AMR][1000 genomes]
rs73777437	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100134400-100139200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:100135400-100139000	Weak transcription	Brain Hippocampus Middle	brain

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