Variant report

Variant	rs17779305
Chromosome Location	chr5:100142626-100142627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:100140257..100142972-chr5:100150394..100152547,2	K562	blood:

Variant related genes	Relation type
ENSG00000221263	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10478648	0.92[AMR][1000 genomes]
rs17159001	0.89[EUR][1000 genomes]
rs17160818	0.91[AMR][1000 genomes]
rs17719528	0.83[AMR][1000 genomes]
rs17720901	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17721341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17721790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17722713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17722756	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17723146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17725086	1.00[AMR][1000 genomes]
rs17725882	1.00[AMR][1000 genomes]
rs17726376	1.00[AMR][1000 genomes]
rs17775827	0.83[AMR][1000 genomes]
rs17775983	0.83[AMR][1000 genomes]
rs17776515	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17776916	0.85[EUR][1000 genomes]
rs17777079	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17777349	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17778120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17779694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17779731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17780072	1.00[AMR][1000 genomes]
rs17780121	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs17780854	1.00[AMR][1000 genomes]
rs17780992	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs17781289	1.00[AMR][1000 genomes]
rs17782650	1.00[AMR][1000 genomes]
rs57652761	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6866516	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73777435	1.00[AMR][1000 genomes]
rs73777437	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100138800-100143800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr5:100139000-100146400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:100139400-100154400	Weak transcription	Fetal Lung	lung
4	chr5:100139400-100155400	Weak transcription	Placenta	Placenta
5	chr5:100139600-100143400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr5:100139600-100144400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:100139600-100149200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:100140200-100147000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:100140800-100147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:100141800-100147000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:100142000-100143800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:100142200-100147000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:100142400-100144200	ZNF genes & repeats	GM12878-XiMat	blood
14	chr5:100142400-100146400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr5:100142400-100150000	Strong transcription	Dnd41	blood
16	chr5:100142400-100154000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:100142600-100147000	Weak transcription	Primary T cells from cord blood	blood
18	chr5:100142600-100150000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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