Variant report

Variant	rs17725882
Chromosome Location	chr5:100249745-100249746
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10478648	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17160818	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17720901	1.00[AMR][1000 genomes]
rs17721341	1.00[AMR][1000 genomes]
rs17721790	1.00[AMR][1000 genomes]
rs17722713	1.00[AMR][1000 genomes]
rs17722756	0.85[AMR][1000 genomes]
rs17723146	1.00[AMR][1000 genomes]
rs17725086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17726376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17776515	0.83[AMR][1000 genomes]
rs17777079	0.92[AMR][1000 genomes]
rs17777349	1.00[AMR][1000 genomes]
rs17778120	1.00[AMR][1000 genomes]
rs17778217	1.00[AMR][1000 genomes]
rs17778313	1.00[AMR][1000 genomes]
rs17778440	1.00[AMR][1000 genomes]
rs17778487	1.00[AMR][1000 genomes]
rs17778598	1.00[AMR][1000 genomes]
rs17778786	1.00[AMR][1000 genomes]
rs17779305	1.00[AMR][1000 genomes]
rs17779694	1.00[AMR][1000 genomes]
rs17779731	1.00[AMR][1000 genomes]
rs17780072	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17780121	1.00[AMR][1000 genomes]
rs17780854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17780992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17781289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17782650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57652761	0.83[AMR][1000 genomes]
rs6866516	1.00[AMR][1000 genomes]
rs73777435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv882471	chr5:100234439-100362071	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv882472	chr5:100234439-100512338	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv462320	chr5:100247554-100775607	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv599176	chr5:100247554-100775607	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100246200-100252200	Weak transcription	Dnd41	blood

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