Variant report

Variant	rs73777437
Chromosome Location	chr5:100225617-100225618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10478648	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17160818	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17719528	0.83[AMR][1000 genomes]
rs17720901	1.00[AMR][1000 genomes]
rs17721341	1.00[AMR][1000 genomes]
rs17721790	1.00[AMR][1000 genomes]
rs17722713	1.00[AMR][1000 genomes]
rs17722756	0.85[AMR][1000 genomes]
rs17723146	1.00[AMR][1000 genomes]
rs17725086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17725882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17726376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17775827	0.83[AMR][1000 genomes]
rs17775983	0.83[AMR][1000 genomes]
rs17776515	0.83[AMR][1000 genomes]
rs17777079	0.92[AMR][1000 genomes]
rs17777349	1.00[AMR][1000 genomes]
rs17778120	1.00[AMR][1000 genomes]
rs17778217	1.00[AMR][1000 genomes]
rs17778313	1.00[AMR][1000 genomes]
rs17778440	1.00[AMR][1000 genomes]
rs17778487	1.00[AMR][1000 genomes]
rs17778598	1.00[AMR][1000 genomes]
rs17778786	1.00[AMR][1000 genomes]
rs17779305	1.00[AMR][1000 genomes]
rs17779694	1.00[AMR][1000 genomes]
rs17779731	1.00[AMR][1000 genomes]
rs17780072	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17780121	1.00[AMR][1000 genomes]
rs17780854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17780992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17781289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17782650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57652761	0.83[AMR][1000 genomes]
rs57847819	1.00[AFR][1000 genomes]
rs6866516	1.00[AMR][1000 genomes]
rs73775449	0.89[AFR][1000 genomes]
rs73775644	0.89[AFR][1000 genomes]
rs73777433	1.00[AFR][1000 genomes]
rs73777434	0.80[AFR][1000 genomes]
rs73777435	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777436	1.00[AFR][1000 genomes]
rs73777443	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100200200-100234400	Weak transcription	Fetal Brain Male	brain
2	chr5:100208000-100235800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:100218800-100225800	Weak transcription	Placenta	Placenta
4	chr5:100219000-100233400	Weak transcription	Brain Germinal Matrix	brain
5	chr5:100219200-100226200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:100222200-100229600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr5:100222400-100226000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr5:100222400-100228000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:100223200-100229600	Weak transcription	Fetal Thymus	thymus
10	chr5:100223600-100228200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr5:100224200-100227200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr5:100224600-100226600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr5:100224600-100227400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr5:100224600-100227600	Flanking Active TSS	Dnd41	blood
15	chr5:100224800-100226800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:100224800-100227000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:100224800-100227400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:100225000-100225800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
19	chr5:100225000-100226000	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr5:100225000-100226200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr5:100225000-100226400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr5:100225000-100226800	Active TSS	Adipose Nuclei	Adipose
23	chr5:100225000-100226800	Active TSS	Duodenum Mucosa	Duodenum
24	chr5:100225000-100227000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr5:100225000-100227000	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr5:100225000-100227000	Active TSS	Right Atrium	heart
27	chr5:100225000-100227400	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr5:100225000-100231600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:100225200-100226400	Active TSS	Liver	Liver
30	chr5:100225200-100226600	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr5:100225200-100233800	Weak transcription	Thymus	Thymus
32	chr5:100225400-100225800	Active TSS	Primary hematopoietic stem cells	blood
33	chr5:100225400-100225800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr5:100225400-100225800	Weak transcription	Hela-S3	cervix
35	chr5:100225400-100226000	Active TSS	Monocytes-CD14+_RO01746	blood
36	chr5:100225400-100226400	Active TSS	Osteobl	bone
37	chr5:100225400-100226600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr5:100225400-100226800	Active TSS	Fetal Lung	lung
39	chr5:100225400-100226800	Active TSS	A549	lung
40	chr5:100225400-100227000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:100225400-100227400	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr5:100225400-100227600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr5:100225600-100225800	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr5:100225600-100225800	Active TSS	Primary B cells from cord blood	blood
45	chr5:100225600-100226000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr5:100225600-100226000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr5:100225600-100226000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
48	chr5:100225600-100226000	Active TSS	Brain Anterior Caudate	brain
49	chr5:100225600-100226000	Active TSS	HUVEC	blood vessel
50	chr5:100225600-100226000	Enhancers	NHEK	skin

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