The 2.0 version of rSNPBase

Variant report

Variant rs1772780
Chromosome Location chr1:94112307-94112308
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94088600-94118800 Weak transcription Gastric stomach
2 chr1:94091800-94117400 Weak transcription Fetal Lung lung
3 chr1:94094200-94120400 Weak transcription Psoas Muscle Psoas
4 chr1:94095600-94125400 Weak transcription Colon Smooth Muscle Colon
5 chr1:94100000-94135800 Weak transcription Fetal Stomach stomach
6 chr1:94101600-94128800 Weak transcription Right Ventricle heart
7 chr1:94102000-94117200 Weak transcription Lung lung
8 chr1:94102000-94119800 Weak transcription HSMMtube muscle
9 chr1:94102000-94125400 Weak transcription Fetal Kidney kidney
10 chr1:94102000-94125600 Weak transcription Fetal Muscle Trunk muscle
11 chr1:94102600-94114200 Weak transcription Brain Substantia Nigra brain
12 chr1:94102600-94119200 Weak transcription Fetal Intestine Small intestine
13 chr1:94102800-94119000 Weak transcription Brain Angular Gyrus brain
14 chr1:94103000-94121800 Weak transcription Duodenum Mucosa Duodenum
15 chr1:94103800-94135800 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr1:94104800-94117600 Weak transcription HepG2 liver
17 chr1:94105000-94113800 Weak transcription Brain Anterior Caudate brain
18 chr1:94105000-94118200 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr1:94105800-94117200 Weak transcription Brain Inferior Temporal Lobe brain
20 chr1:94106400-94126000 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:94106600-94114400 Strong transcription HMEC breast
22 chr1:94106800-94115200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:94106800-94118800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:94107000-94114400 Weak transcription Left Ventricle heart
25 chr1:94107200-94125600 Weak transcription Aorta Aorta
26 chr1:94107600-94114400 Weak transcription Brain Cingulate Gyrus brain
27 chr1:94107600-94119200 Weak transcription Stomach Smooth Muscle stomach
28 chr1:94107800-94120000 Weak transcription Primary B cells from cord blood blood
29 chr1:94108200-94112400 Weak transcription Hela-S3 cervix
30 chr1:94108200-94114400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr1:94108200-94116600 Weak transcription Fetal Muscle Leg muscle
32 chr1:94108200-94118800 Weak transcription NHDF-Ad bronchial
33 chr1:94108200-94119400 Weak transcription Placenta Amnion Placenta Amnion
34 chr1:94108400-94114400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
35 chr1:94108400-94116200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr1:94108400-94116600 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr1:94108400-94116600 Weak transcription Osteobl bone
38 chr1:94108400-94119000 Weak transcription Adipose Nuclei Adipose
39 chr1:94108400-94119200 Weak transcription NHLF lung
40 chr1:94108600-94112800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:94108600-94114400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:94108600-94116400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr1:94108600-94116600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
44 chr1:94108600-94116600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr1:94108600-94117200 Weak transcription Ovary ovary
46 chr1:94108600-94122200 Weak transcription HUVEC blood vessel
47 chr1:94108600-94130400 Weak transcription Esophagus oesophagus
48 chr1:94108800-94112600 Weak transcription Muscle Satellite Cultured Cells --
49 chr1:94108800-94114200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr1:94109000-94114400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015