The 2.0 version of rSNPBase

Variant report

Variant rs236286
Chromosome Location chr1:94132949-94132950
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94100000-94135800 Weak transcription Fetal Stomach stomach
2 chr1:94103800-94135800 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:94123200-94135800 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr1:94126200-94134600 Weak transcription Primary B cells from cord blood blood
5 chr1:94127000-94133600 Enhancers Ovary ovary
6 chr1:94127200-94134000 Enhancers Placenta Amnion Placenta Amnion
7 chr1:94127400-94133600 Enhancers Fetal Adrenal Gland Adrenal Gland
8 chr1:94127400-94143800 Genic enhancers HMEC breast
9 chr1:94127400-94144000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:94127800-94134000 Enhancers Colon Smooth Muscle Colon
11 chr1:94128400-94134200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr1:94128800-94134000 Enhancers Right Atrium heart
13 chr1:94128800-94137800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
14 chr1:94129000-94137000 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr1:94129200-94144800 Weak transcription GM12878-XiMat blood
16 chr1:94129400-94137600 Weak transcription Stomach Smooth Muscle stomach
17 chr1:94129600-94133400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr1:94129800-94135000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr1:94130200-94133400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
20 chr1:94130400-94134000 Enhancers Esophagus oesophagus
21 chr1:94130600-94134400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr1:94130800-94133000 Weak transcription Stomach Mucosa stomach
23 chr1:94130800-94134600 Weak transcription Brain Hippocampus Middle brain
24 chr1:94130800-94134800 Weak transcription Primary B cells from peripheral blood blood
25 chr1:94130800-94141000 Genic enhancers HSMM muscle
26 chr1:94131000-94134600 Weak transcription Brain Inferior Temporal Lobe brain
27 chr1:94131000-94138000 Weak transcription Fetal Brain Male brain
28 chr1:94131200-94133200 Weak transcription Fetal Intestine Large intestine
29 chr1:94131200-94133400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr1:94131200-94134600 Weak transcription Brain Cingulate Gyrus brain
31 chr1:94131200-94134600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr1:94131200-94134600 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr1:94131200-94134800 Genic enhancers HUVEC blood vessel
34 chr1:94131200-94136200 Genic enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr1:94131200-94136200 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr1:94131200-94144000 Genic enhancers Placenta Placenta
37 chr1:94131400-94134200 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr1:94131400-94135800 Weak transcription Aorta Aorta
39 chr1:94131400-94136400 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr1:94131400-94137000 Genic enhancers A549 lung
41 chr1:94131400-94140600 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:94131600-94133200 Genic enhancers Psoas Muscle Psoas
43 chr1:94131600-94134600 Weak transcription Brain Angular Gyrus brain
44 chr1:94131600-94136200 Weak transcription Fetal Lung lung
45 chr1:94131600-94143800 Genic enhancers NHEK skin
46 chr1:94131800-94133400 Enhancers HUES64 Cell Line embryonic stem cell
47 chr1:94131800-94134000 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
48 chr1:94131800-94140400 Genic enhancers NHDF-Ad bronchial
49 chr1:94132000-94133000 Enhancers H1 Cell Line embryonic stem cell
50 chr1:94132000-94133000 Enhancers iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015