The 2.0 version of rSNPBase

Variant report

Variant rs236290
Chromosome Location chr1:94121125-94121126
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94095600-94125400 Weak transcription Colon Smooth Muscle Colon
2 chr1:94100000-94135800 Weak transcription Fetal Stomach stomach
3 chr1:94101600-94128800 Weak transcription Right Ventricle heart
4 chr1:94102000-94125400 Weak transcription Fetal Kidney kidney
5 chr1:94102000-94125600 Weak transcription Fetal Muscle Trunk muscle
6 chr1:94103000-94121800 Weak transcription Duodenum Mucosa Duodenum
7 chr1:94103800-94135800 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:94106400-94126000 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:94107200-94125600 Weak transcription Aorta Aorta
10 chr1:94108600-94122200 Weak transcription HUVEC blood vessel
11 chr1:94108600-94130400 Weak transcription Esophagus oesophagus
12 chr1:94110200-94124400 Strong transcription NHEK skin
13 chr1:94110800-94127400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr1:94110800-94128800 Weak transcription Primary B cells from peripheral blood blood
15 chr1:94110800-94130200 Weak transcription H9 Cell Line embryonic stem cell
16 chr1:94111200-94127600 Weak transcription ES-WA7 Cell Line embryonic stem cell
17 chr1:94111600-94126800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr1:94111800-94122200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr1:94111800-94127400 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr1:94112400-94125800 Strong transcription Hela-S3 cervix
21 chr1:94112400-94127400 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr1:94113000-94122400 Weak transcription HUES64 Cell Line embryonic stem cell
23 chr1:94113800-94124200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:94114600-94125600 Weak transcription Brain Substantia Nigra brain
25 chr1:94115000-94128800 Weak transcription Left Ventricle heart
26 chr1:94115000-94132000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
27 chr1:94117400-94127400 Genic enhancers Muscle Satellite Cultured Cells --
28 chr1:94117400-94128800 Weak transcription Spleen Spleen
29 chr1:94117600-94127600 Weak transcription H1 Cell Line embryonic stem cell
30 chr1:94117600-94128200 Weak transcription Brain Inferior Temporal Lobe brain
31 chr1:94118000-94125200 Weak transcription HepG2 liver
32 chr1:94118000-94126000 Weak transcription Stomach Mucosa stomach
33 chr1:94118200-94121600 Enhancers Brain Anterior Caudate brain
34 chr1:94118600-94125400 Weak transcription Fetal Lung lung
35 chr1:94118800-94121600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
36 chr1:94119400-94122800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr1:94119400-94124400 Weak transcription Ovary ovary
38 chr1:94119600-94121400 Genic enhancers A549 lung
39 chr1:94119600-94128800 Weak transcription Lung lung
40 chr1:94119800-94125000 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:94119800-94127200 Weak transcription Placenta Amnion Placenta Amnion
42 chr1:94119800-94128800 Weak transcription Gastric stomach
43 chr1:94120000-94125400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr1:94120000-94128800 Weak transcription Right Atrium heart
45 chr1:94120200-94121800 Weak transcription Fetal Intestine Small intestine
46 chr1:94120200-94121800 Genic enhancers HMEC breast
47 chr1:94120200-94122000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:94120200-94125400 Weak transcription Fetal Muscle Leg muscle
49 chr1:94120400-94121200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:94120400-94121200 Weak transcription HSMMtube muscle

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Last update: Aug 31, 2015