Variant report

Variant	rs17759083
Chromosome Location	chr17:19963605-19963606
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10083830	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10083840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1009082	1.00[CHB][hapmap]
rs10438824	1.00[CHB][hapmap]
rs11204422	0.92[AMR][1000 genomes]
rs12449914	1.00[ASN][1000 genomes]
rs12450857	1.00[CHB][hapmap]
rs12451841	0.90[AMR][1000 genomes]
rs12453720	1.00[CHB][hapmap]
rs12937327	1.00[ASN][1000 genomes]
rs12942179	0.92[AMR][1000 genomes]
rs12943904	1.00[ASN][1000 genomes]
rs12947950	1.00[CHB][hapmap]
rs12949485	1.00[CHB][hapmap]
rs1544421	1.00[CHB][hapmap]
rs1638527	1.00[CHB][hapmap]
rs17604987	1.00[CHB][hapmap]
rs17686622	1.00[CHB][hapmap]
rs17686839	1.00[CHB][hapmap]
rs17759041	1.00[ASN][1000 genomes]
rs17759609	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1812934	1.00[CHB][hapmap]
rs203467	1.00[CHB][hapmap]
rs203475	1.00[CHB][hapmap]
rs203480	1.00[CHB][hapmap]
rs2107566	1.00[CHB][hapmap]
rs2108981	1.00[CHB][hapmap]
rs2158473	1.00[CHB][hapmap]
rs2189710	1.00[CHB][hapmap]
rs2263175	1.00[CHB][hapmap]
rs2386485	1.00[CHB][hapmap]
rs2526460	1.00[CHB][hapmap]
rs2526462	1.00[CHB][hapmap]
rs2526468	1.00[CHB][hapmap]
rs2526469	1.00[CHB][hapmap]
rs2526471	1.00[CHB][hapmap]
rs2526474	1.00[CHB][hapmap]
rs2526475	1.00[CHB][hapmap]
rs2526480	1.00[CHB][hapmap]
rs2526484	1.00[CHB][hapmap]
rs2526491	1.00[CHB][hapmap]
rs2703772	1.00[CHB][hapmap]
rs2703773	1.00[CHB][hapmap]
rs2703774	1.00[CHB][hapmap]
rs2703782	1.00[CHB][hapmap]
rs2703790	1.00[CHB][hapmap]
rs2703791	1.00[CHB][hapmap]
rs2703794	1.00[CHB][hapmap]
rs2703799	1.00[CHB][hapmap]
rs2703801	1.00[CHB][hapmap]
rs2703802	1.00[CHB][hapmap]
rs2703804	1.00[CHB][hapmap]
rs2703806	1.00[CHB][hapmap]
rs2703808	1.00[CHB][hapmap]
rs2703813	1.00[CHB][hapmap]
rs2703815	1.00[CHB][hapmap]
rs2703816	1.00[CHB][hapmap]
rs2703817	1.00[CHB][hapmap]
rs2703818	1.00[CHB][hapmap]
rs2703821	1.00[CHB][hapmap]
rs34089239	1.00[CHB][hapmap]
rs34370440	0.91[AMR][1000 genomes]
rs35317166	1.00[ASN][1000 genomes]
rs35915823	1.00[ASN][1000 genomes]
rs3862151	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4588033	1.00[CHB][hapmap]
rs4924802	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4924809	1.00[CHB][hapmap]
rs4924810	1.00[CHB][hapmap]
rs4925054	1.00[CHB][hapmap]
rs4925071	1.00[ASN][1000 genomes]
rs4925074	1.00[ASN][1000 genomes]
rs4925082	0.90[AMR][1000 genomes]
rs4925084	1.00[CHB][hapmap]
rs56371654	1.00[ASN][1000 genomes]
rs7215803	0.91[AMR][1000 genomes]
rs888424	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9901125	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv833394	chr17:19827714-19999577	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1060337	chr17:19828636-20204872	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv543257	chr17:19828636-20204872	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv907870	chr17:19871922-20001612	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv907871	chr17:19927699-20088492	Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv482438	chr17:19934376-20089005	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv907872	chr17:19945841-19996140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1056224	chr17:19946604-19993026	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv543258	chr17:19946604-19993026	Weak transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1066594	chr17:19947874-19986671	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv543259	chr17:19947874-19986671	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19943800-19965800	Weak transcription	Aorta	Aorta
2	chr17:19948200-19966400	Weak transcription	Brain Angular Gyrus	brain
3	chr17:19950800-19966400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr17:19957000-19965800	Weak transcription	Ovary	ovary
5	chr17:19957000-19967000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr17:19962600-19963800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr17:19962600-19963800	Enhancers	K562	blood
8	chr17:19962600-19964000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr17:19962600-19964200	Enhancers	GM12878-XiMat	blood
10	chr17:19962600-19964400	Enhancers	Hela-S3	cervix
11	chr17:19963000-19963800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:19963000-19966000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr17:19963200-19966400	Weak transcription	Brain Hippocampus Middle	brain
14	chr17:19963600-19963800	Enhancers	A549	lung
15	chr17:19963600-19964800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr17:19963600-19966200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr17:19963600-19966200	Weak transcription	Osteobl	bone
18	chr17:19963600-19966400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr17:19963600-19966400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr17:19963600-19966400	Weak transcription	Brain Anterior Caudate	brain
21	chr17:19963600-19966400	Weak transcription	HMEC	breast
22	chr17:19963600-19967000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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