Variant report

Variant	rs2526491
Chromosome Location	chr17:20097462-20097463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:20096735..20100140-chr17:20107698..20112138,4	K562	blood:
2	chr17:20090600..20093131-chr17:20093995..20097468,3	MCF-7	breast:
3	chr17:20096015..20099683-chr17:20108650..20110634,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128487	Chromatin interaction

Extended variants
information (count: 142 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs1009082	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10438824	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654025	0.81[CEU][hapmap];0.82[MEX][hapmap]
rs11870147	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];1.00[ASN][1000 genomes]
rs11871827	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];1.00[ASN][1000 genomes]
rs11871945	1.00[ASN][1000 genomes]
rs12935996	1.00[YRI][hapmap]
rs12937827	1.00[ASN][1000 genomes]
rs12941200	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12947950	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12948178	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12949485	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12952398	1.00[ASN][1000 genomes]
rs1373147	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1544421	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1561974	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17686622	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17686798	0.86[ASW][hapmap];0.81[CEU][hapmap];0.92[MEX][hapmap]
rs17686839	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17759609	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap];0.91[MKK][hapmap];0.84[TSI][hapmap]
rs17759923	1.00[ASN][1000 genomes]
rs17759959	0.81[CEU][hapmap]
rs1812934	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[MEX][hapmap];1.00[ASN][1000 genomes]
rs1985810	1.00[ASN][1000 genomes]
rs1992562	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];1.00[ASN][1000 genomes]
rs2013441	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[MEX][hapmap];1.00[ASN][1000 genomes]
rs2013576	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs2034109	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs2058971	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2080673	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2107566	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2120282	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2158473	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2165897	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs2189710	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2243732	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2263175	1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2386429	1.00[ASN][1000 genomes]
rs2386485	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526458	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526460	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526462	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs2526464	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526467	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2526468	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526469	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526470	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526471	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526472	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526473	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526474	1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526475	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526480	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526483	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526484	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526488	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526490	0.90[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703772	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703773	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703774	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[MEX][hapmap];1.00[ASN][1000 genomes]
rs2703778	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703779	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703780	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703782	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703784	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703785	1.00[ASN][1000 genomes]
rs2703787	1.00[ASN][1000 genomes]
rs2703789	1.00[ASN][1000 genomes]
rs2703790	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2703791	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2703792	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2703794	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703799	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703801	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703802	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703804	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703806	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703808	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703810	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703811	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2703813	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703815	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703816	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703817	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703818	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703820	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2703821	1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34089239	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];1.00[ASN][1000 genomes]
rs34644796	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34712254	1.00[ASN][1000 genomes]
rs35103332	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3850783	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];1.00[ASN][1000 genomes]
rs3850784	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs3850785	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3862151	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[TSI][hapmap]
rs4588033	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[MEX][hapmap];1.00[ASN][1000 genomes]
rs4924802	1.00[CHB][hapmap]
rs4924808	0.81[CEU][hapmap];0.92[MEX][hapmap]
rs4924809	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4924810	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4925084	1.00[CHB][hapmap]
rs4925088	0.88[MEX][hapmap]
rs4925089	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62066869	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62067558	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6587063	0.83[ASN][1000 genomes]
rs6587064	0.91[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7207611	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];1.00[ASN][1000 genomes]
rs7207817	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7223488	0.83[ASN][1000 genomes]
rs8068720	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs8070401	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071665	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs8074047	1.00[ASN][1000 genomes]
rs8079701	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8080827	1.00[CHB][hapmap]
rs9325894	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9892630	1.00[ASN][1000 genomes]
rs9896221	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9896709	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9897328	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];1.00[ASN][1000 genomes]
rs9900166	1.00[ASN][1000 genomes]
rs9904928	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[MEX][hapmap];1.00[ASN][1000 genomes]
rs9905493	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9915059	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1060337	chr17:19828636-20204872	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv543257	chr17:19828636-20204872	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv833395	chr17:19969959-20124084	Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1067100	chr17:20007480-20464520	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv543260	chr17:20007480-20464520	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	nsv482830	chr17:20012748-20169153	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv833396	chr17:20029183-20150808	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv428669	chr17:20071969-20245033	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1057870	chr17:20079146-20121848	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1064854	chr17:20086562-20225751	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv2761953	chr17:20086562-20225763	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1063833	chr17:20088333-20206601	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv574581	chr17:20088492-20699545	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2526491	MYO15A	cis	parietal	SCAN
rs2526491	LOC388387	trans	cerebellum	SCAN
rs2526491	SPECC1	Cis_1M	lymphoblastoid	RTeQTL
rs2526491	FAM27L	cis	cerebellum	SCAN
rs2526491	CYTSB	cis	cerebellum	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20089000-20097600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr17:20089600-20098000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr17:20093000-20097800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr17:20093000-20099600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr17:20094200-20097800	Enhancers	Brain Substantia Nigra	brain
6	chr17:20094200-20098000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr17:20094200-20098400	Enhancers	Brain Hippocampus Middle	brain
8	chr17:20094200-20103800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr17:20094200-20105400	Weak transcription	Gastric	stomach
10	chr17:20094600-20097800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr17:20094600-20099400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr17:20094600-20101000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr17:20094600-20105400	Weak transcription	K562	blood
14	chr17:20094800-20105600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr17:20095200-20101600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr17:20095400-20104800	Weak transcription	HMEC	breast
17	chr17:20095600-20099600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr17:20096000-20103600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr17:20096200-20097800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr17:20096200-20100600	Enhancers	Hela-S3	cervix
21	chr17:20096200-20101000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr17:20096400-20097600	Enhancers	Duodenum Mucosa	Duodenum
23	chr17:20096400-20100800	Weak transcription	Aorta	Aorta
24	chr17:20096800-20103400	Weak transcription	Brain Angular Gyrus	brain
25	chr17:20097000-20101600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr17:20097200-20097600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
27	chr17:20097200-20099800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr17:20097200-20100200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
29	chr17:20097200-20100600	Weak transcription	Brain Anterior Caudate	brain
30	chr17:20097400-20097600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr17:20097400-20098800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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