Variant report

Variant rs2526458
Chromosome Location chr17:20092200-20092201
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:20060800-20092200 Weak transcription Fetal Intestine Small intestine
2 chr17:20080400-20092200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr17:20080400-20092400 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr17:20082800-20092400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr17:20084400-20092200 Weak transcription Brain Germinal Matrix brain
6 chr17:20085600-20093800 Enhancers Brain Substantia Nigra brain
7 chr17:20086000-20092200 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr17:20086000-20092600 Enhancers Cortex derived primary cultured neurospheres brain
9 chr17:20087400-20092200 Enhancers Brain Angular Gyrus brain
10 chr17:20087600-20092200 Enhancers Brain Cingulate Gyrus brain
11 chr17:20087600-20092400 Enhancers Brain Hippocampus Middle brain
12 chr17:20088600-20092400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr17:20088800-20092200 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr17:20088800-20092200 Weak transcription H9 Cell Line embryonic stem cell
15 chr17:20088800-20092200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr17:20088800-20092200 Weak transcription K562 blood
17 chr17:20088800-20093000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr17:20089000-20092200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr17:20089000-20092400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
20 chr17:20089000-20092600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr17:20089000-20092800 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr17:20089000-20097600 Weak transcription Primary hematopoietic stem cells blood
23 chr17:20089200-20092400 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr17:20089200-20095000 Weak transcription Primary monocytes fromperipheralblood blood
25 chr17:20089600-20096400 Enhancers Brain Inferior Temporal Lobe brain
26 chr17:20089600-20098000 Strong transcription Monocytes-CD14+_RO01746 blood
27 chr17:20090200-20092600 Enhancers iPS-20b Cell Line embryonic stem cell
28 chr17:20090400-20095000 Enhancers H1 Cell Line embryonic stem cell
29 chr17:20090600-20092200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr17:20090800-20092200 Weak transcription A549 lung
31 chr17:20090800-20092400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr17:20091000-20092200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr17:20091000-20092200 Weak transcription iPS-18 Cell Line embryonic stem cell
34 chr17:20091000-20092200 Weak transcription Hela-S3 cervix
35 chr17:20091000-20092200 Weak transcription HSMM muscle
36 chr17:20091000-20092400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr17:20091000-20092400 Weak transcription Ovary ovary
38 chr17:20091000-20092600 Weak transcription Aorta Aorta
39 chr17:20091000-20092600 Weak transcription Spleen Spleen
40 chr17:20091200-20092200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr17:20091200-20092400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr17:20091200-20092600 Weak transcription NHLF lung
43 chr17:20091200-20095000 Enhancers Osteobl bone
44 chr17:20091400-20093800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
45 chr17:20091600-20095000 Enhancers NH-A brain
46 chr17:20091600-20095600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr17:20091800-20092200 Enhancers Brain Anterior Caudate brain
48 chr17:20091800-20094400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
49 chr17:20091800-20094600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr17:20091800-20094800 Enhancers HUES64 Cell Line embryonic stem cell

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