Variant report

Variant rs2165897
Chromosome Location chr17:20209721-20209722
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:20136400-20209800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr17:20185200-20209800 Weak transcription H9 Cell Line embryonic stem cell
3 chr17:20186200-20209800 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr17:20187800-20223800 Weak transcription Pancreas Pancrea
5 chr17:20188600-20209800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr17:20188600-20209800 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr17:20197800-20209800 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr17:20201000-20220000 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr17:20201400-20209800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
10 chr17:20204000-20209800 Weak transcription Fetal Intestine Small intestine
11 chr17:20204200-20209800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr17:20204200-20209800 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr17:20204400-20209800 Weak transcription Aorta Aorta
14 chr17:20204400-20209800 Weak transcription Fetal Intestine Large intestine
15 chr17:20204400-20216800 Weak transcription Gastric stomach
16 chr17:20204600-20209800 Weak transcription Fetal Adrenal Gland Adrenal Gland
17 chr17:20204800-20209800 Weak transcription HSMM muscle
18 chr17:20204800-20209800 Weak transcription HSMMtube muscle
19 chr17:20204800-20212200 Weak transcription Placenta Amnion Placenta Amnion
20 chr17:20205800-20210400 Weak transcription Muscle Satellite Cultured Cells --
21 chr17:20206800-20209800 Weak transcription Brain Angular Gyrus brain
22 chr17:20206800-20209800 Weak transcription Brain Anterior Caudate brain
23 chr17:20206800-20210600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr17:20207800-20211000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr17:20207800-20211200 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
26 chr17:20207800-20211400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr17:20208000-20211400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr17:20208000-20212000 ZNF genes & repeats A549 lung
29 chr17:20208000-20212200 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
30 chr17:20208200-20209800 Strong transcription Ovary ovary
31 chr17:20208200-20211400 Strong transcription Hela-S3 cervix
32 chr17:20208400-20209800 Weak transcription Primary B cells from cord blood blood
33 chr17:20208400-20209800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr17:20208400-20213000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr17:20208600-20209800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr17:20208600-20209800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr17:20208600-20210200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr17:20208600-20213000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr17:20208600-20213000 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr17:20208800-20209800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr17:20208800-20209800 Weak transcription Brain Substantia Nigra brain
42 chr17:20208800-20213000 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
43 chr17:20209000-20211200 ZNF genes & repeats Fetal Brain Female brain
44 chr17:20209000-20211400 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
45 chr17:20209200-20209800 Strong transcription iPS-18 Cell Line embryonic stem cell
46 chr17:20209200-20209800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
47 chr17:20209200-20211000 Strong transcription Rectal Mucosa Donor 31 rectum
48 chr17:20209200-20211200 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
49 chr17:20209400-20210000 Strong transcription Brain Cingulate Gyrus brain
50 chr17:20209400-20211000 ZNF genes & repeats H1 Cell Line embryonic stem cell

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