Variant report
Variant | rs7223488 |
---|---|
Chromosome Location | chr17:20244264-20244265 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-SPECC1-3 | chr17:20244056-20244356 | NONHSAT146561 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1009082 | 0.83[ASN][1000 genomes] |
rs10438824 | 0.83[ASN][1000 genomes] |
rs11870147 | 0.83[ASN][1000 genomes] |
rs11871827 | 0.83[ASN][1000 genomes] |
rs11871945 | 0.83[ASN][1000 genomes] |
rs12937827 | 0.83[ASN][1000 genomes] |
rs12947950 | 0.83[ASN][1000 genomes] |
rs12949485 | 0.83[ASN][1000 genomes] |
rs12952398 | 0.83[ASN][1000 genomes] |
rs1373147 | 0.83[ASN][1000 genomes] |
rs1544421 | 0.83[ASN][1000 genomes] |
rs1561974 | 0.83[ASN][1000 genomes] |
rs17686622 | 0.83[ASN][1000 genomes] |
rs17686839 | 0.83[ASN][1000 genomes] |
rs17759923 | 0.83[ASN][1000 genomes] |
rs1812934 | 0.83[ASN][1000 genomes] |
rs1985810 | 0.83[ASN][1000 genomes] |
rs1992562 | 0.83[ASN][1000 genomes] |
rs2013441 | 0.83[ASN][1000 genomes] |
rs2013576 | 0.83[ASN][1000 genomes] |
rs2034109 | 0.83[ASN][1000 genomes] |
rs2080673 | 0.83[ASN][1000 genomes] |
rs2107566 | 0.83[ASN][1000 genomes] |
rs2120282 | 0.83[ASN][1000 genomes] |
rs2158473 | 0.83[ASN][1000 genomes] |
rs2165897 | 0.83[ASN][1000 genomes] |
rs2189710 | 0.83[ASN][1000 genomes] |
rs2243732 | 0.83[ASN][1000 genomes] |
rs2263175 | 0.83[ASN][1000 genomes] |
rs2386429 | 0.83[ASN][1000 genomes] |
rs2386485 | 0.83[ASN][1000 genomes] |
rs2526458 | 0.83[ASN][1000 genomes] |
rs2526460 | 0.83[ASN][1000 genomes] |
rs2526464 | 0.83[ASN][1000 genomes] |
rs2526467 | 0.83[ASN][1000 genomes] |
rs2526468 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2526469 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2526470 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2526471 | 0.83[ASN][1000 genomes] |
rs2526472 | 0.83[ASN][1000 genomes] |
rs2526473 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2526474 | 0.83[ASN][1000 genomes] |
rs2526475 | 0.83[ASN][1000 genomes] |
rs2526480 | 0.83[ASN][1000 genomes] |
rs2526483 | 0.83[ASN][1000 genomes] |
rs2526484 | 0.83[ASN][1000 genomes] |
rs2526488 | 0.83[ASN][1000 genomes] |
rs2526490 | 0.83[ASN][1000 genomes] |
rs2526491 | 0.83[ASN][1000 genomes] |
rs2526492 | 0.83[ASN][1000 genomes] |
rs2703772 | 0.83[ASN][1000 genomes] |
rs2703773 | 0.83[ASN][1000 genomes] |
rs2703774 | 0.83[ASN][1000 genomes] |
rs2703778 | 0.83[ASN][1000 genomes] |
rs2703779 | 0.83[ASN][1000 genomes] |
rs2703780 | 0.83[ASN][1000 genomes] |
rs2703782 | 0.83[ASN][1000 genomes] |
rs2703784 | 0.83[ASN][1000 genomes] |
rs2703785 | 0.83[ASN][1000 genomes] |
rs2703787 | 0.83[ASN][1000 genomes] |
rs2703789 | 0.83[ASN][1000 genomes] |
rs2703790 | 0.83[ASN][1000 genomes] |
rs2703791 | 0.83[ASN][1000 genomes] |
rs2703792 | 0.83[ASN][1000 genomes] |
rs2703794 | 0.83[ASN][1000 genomes] |
rs2703797 | 0.83[ASN][1000 genomes] |
rs2703799 | 0.83[ASN][1000 genomes] |
rs2703801 | 0.83[ASN][1000 genomes] |
rs2703802 | 0.83[ASN][1000 genomes] |
rs2703804 | 0.83[ASN][1000 genomes] |
rs2703806 | 0.83[ASN][1000 genomes] |
rs2703808 | 0.83[ASN][1000 genomes] |
rs2703810 | 0.83[ASN][1000 genomes] |
rs2703813 | 0.83[ASN][1000 genomes] |
rs2703815 | 0.83[ASN][1000 genomes] |
rs2703816 | 0.83[ASN][1000 genomes] |
rs2703817 | 0.83[ASN][1000 genomes] |
rs2703818 | 0.83[ASN][1000 genomes] |
rs2703820 | 0.83[ASN][1000 genomes] |
rs2703821 | 0.83[ASN][1000 genomes] |
rs34089239 | 0.83[ASN][1000 genomes] |
rs34644796 | 0.83[ASN][1000 genomes] |
rs34712254 | 0.83[ASN][1000 genomes] |
rs35103332 | 0.80[EUR][1000 genomes] |
rs3850783 | 0.83[ASN][1000 genomes] |
rs3850784 | 0.83[ASN][1000 genomes] |
rs3850785 | 0.83[ASN][1000 genomes] |
rs4588033 | 0.83[ASN][1000 genomes] |
rs4924809 | 0.83[ASN][1000 genomes] |
rs4924810 | 0.83[ASN][1000 genomes] |
rs4925089 | 0.83[ASN][1000 genomes] |
rs62066869 | 0.83[ASN][1000 genomes] |
rs62067558 | 0.83[ASN][1000 genomes] |
rs6587064 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs7207611 | 0.83[ASN][1000 genomes] |
rs7207817 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs8070401 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs8071665 | 0.83[ASN][1000 genomes] |
rs8074047 | 0.83[ASN][1000 genomes] |
rs8079701 | 0.83[ASN][1000 genomes] |
rs9325894 | 0.83[ASN][1000 genomes] |
rs9892630 | 0.83[ASN][1000 genomes] |
rs9896221 | 0.83[ASN][1000 genomes] |
rs9896709 | 0.83[ASN][1000 genomes] |
rs9897328 | 0.83[ASN][1000 genomes] |
rs9900166 | 0.83[ASN][1000 genomes] |
rs9904928 | 0.83[ASN][1000 genomes] |
rs9905493 | 0.83[ASN][1000 genomes] |
rs9915059 | 0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1067100 | chr17:20007480-20464520 | Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 37 gene(s) | inside rSNPs | diseases |
2 | nsv543260 | chr17:20007480-20464520 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 37 gene(s) | inside rSNPs | diseases |
3 | nsv428669 | chr17:20071969-20245033 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv574581 | chr17:20088492-20699545 | Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 53 gene(s) | inside rSNPs | diseases |
5 | nsv1065758 | chr17:20141912-20464366 | Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
6 | nsv543262 | chr17:20141912-20464366 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
7 | nsv1057389 | chr17:20158343-20256498 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
8 | nsv427993 | chr17:20171398-20482061 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 34 gene(s) | inside rSNPs | diseases |
9 | nsv916440 | chr17:20171468-20839266 | ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
10 | nsv520772 | chr17:20184501-20522444 | Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
11 | nsv521025 | chr17:20198024-20514921 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
12 | esv32786 | chr17:20219434-20294008 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
13 | nsv471495 | chr17:20221409-20464225 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
14 | nsv1059504 | chr17:20222112-20581021 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
15 | nsv1066679 | chr17:20225751-20433857 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandlncRNA | 18 gene(s) | inside rSNPs | diseases |
16 | nsv978388 | chr17:20225783-20279044 | Weak transcription Enhancers | TF binding regionCpG islandlncRNA | 3 gene(s) | inside rSNPs | diseases |
17 | esv1795432 | chr17:20236692-20334628 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandlncRNA | 7 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr17:20236200-20244800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |