Variant report

Variant	rs62066869
Chromosome Location	chr17:20059342-20059343
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr17:20058798-20060196	ECC-1	luminal epithelium:	n/a	chr17:20059908-20059918
2	E2F4	chr17:20058966-20059714	MCF10A-Er-Src	breast:	n/a	chr17:20059277-20059286 chr17:20059329-20059340 chr17:20059215-20059224
3	POLR2A	chr17:20058906-20060030	K562	blood:	n/a	n/a
4	EGR1	chr17:20059009-20059361	GM12878	blood:	n/a	chr17:20059211-20059225 chr17:20059285-20059298 chr17:20059140-20059153 chr17:20059138-20059148 chr17:20059213-20059222
5	CCNT2	chr17:20058984-20060125	K562	blood:	n/a	chr17:20059587-20059596
6	STAT3	chr17:20059185-20059429	MCF10A-Er-Src	breast:	n/a	n/a
7	MAZ	chr17:20059312-20059567	HepG2	liver:	n/a	n/a
8	POLR2A	chr17:20059270-20059591	HCT-116	colon:	n/a	n/a
9	ZBTB7A	chr17:20059192-20059917	ECC-1	luminal epithelium:	n/a	chr17:20059562-20059573
10	NFYA	chr17:20059062-20059555	Hela-S3	cervix:	n/a	n/a
11	UBTF	chr17:20058903-20060154	K562	blood:	n/a	n/a
12	JUND	chr17:20059016-20059347	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr17:20059280-20059430	AoAF	blood vessel:	n/a	n/a
14	ELF1	chr17:20058892-20059394	MCF-7	breast:	n/a	n/a
15	POU2F2	chr17:20058806-20059502	GM12891	blood:	n/a	chr17:20058826-20058839
16	MAFK	chr17:20058658-20059822	Hela-S3	cervix:	n/a	n/a
17	FOXA1	chr17:20058963-20059451	T-47D	breast:	n/a	n/a
18	BRCA1	chr17:20059057-20059999	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr17:20058939-20060092	Hela-S3	cervix:	n/a	n/a
20	TCF12	chr17:20058921-20059415	GM12878	blood:	n/a	n/a
21	ZNF143	chr17:20058926-20059452	GM12878	blood:	n/a	chr17:20059105-20059115
22	MYC	chr17:20058978-20059343	MCF-7	breast:	n/a	n/a
23	POLR2A	chr17:20058248-20060182	GM19099	blood:	n/a	n/a
24	RUNX3	chr17:20058405-20060038	GM12878	blood:	n/a	n/a
25	TCF7L2	chr17:20059217-20059399	PANC-1	pancreas:	n/a	n/a
26	TAF1	chr17:20059176-20059512	K562	blood:	n/a	n/a
27	MAX	chr17:20059050-20059649	HepG2	liver:	n/a	n/a
28	ZBTB7A	chr17:20059056-20059673	K562	blood:	n/a	chr17:20059562-20059573
29	POLR2A	chr17:20058945-20059522	SK-N-SH	brain:	n/a	n/a
30	BCL3	chr17:20058724-20059784	A549	lung:	n/a	n/a
31	BACH1	chr17:20058917-20059433	H1-hESC	embryonic stem cell:	n/a	n/a
32	POLR2A	chr17:20058966-20059678	A549	lung:	n/a	n/a
33	GTF2F1	chr17:20058970-20059697	H1-hESC	embryonic stem cell:	n/a	n/a
34	MEF2C	chr17:20058541-20059408	GM12878	blood:	n/a	chr17:20058830-20058851 chr17:20058681-20058696 chr17:20058834-20058845 chr17:20058679-20058696 chr17:20058832-20058847 chr17:20058831-20058847
35	SP1	chr17:20058436-20059381	GM12878	blood:	n/a	chr17:20059276-20059288 chr17:20059214-20059226 chr17:20059276-20059288 chr17:20059214-20059226 chr17:20059216-20059225 chr17:20059277-20059286 chr17:20059278-20059287 chr17:20059137-20059149 chr17:20059215-20059224
36	USF1	chr17:20058865-20059582	A549	lung:	n/a	chr17:20059224-20059240
37	POLR2A	chr17:20058769-20059543	GM12892	blood:	n/a	n/a
38	ZMIZ1	chr17:20058987-20059527	K562	blood:	n/a	n/a
39	MAX	chr17:20059029-20060271	K562	blood:	n/a	chr17:20059908-20059918
40	CHD2	chr17:20058926-20059798	GM12878	blood:	n/a	chr17:20059278-20059288 chr17:20059216-20059226
41	TAF1	chr17:20058955-20059535	K562	blood:	n/a	n/a
42	MXI1	chr17:20059040-20059708	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr17:20059246-20059579	U87	brain:	n/a	n/a
44	POLR2A	chr17:20058976-20060152	MCF10A-Er-Src	breast:	n/a	n/a
45	POLR2A	chr17:20058932-20059646	K562	blood:	n/a	n/a
46	MYC	chr17:20059001-20059608	MCF-7	breast:	n/a	n/a
47	POLR2A	chr17:20058922-20059771	U87	brain:	n/a	n/a
48	MEF2A	chr17:20058397-20059342	GM12878	blood:	n/a	chr17:20058830-20058851 chr17:20058681-20058696 chr17:20058834-20058845 chr17:20058679-20058696 chr17:20058832-20058847 chr17:20058831-20058847
49	POLR2A	chr17:20058864-20060068	MCF-7	breast:	n/a	n/a
50	MXI1	chr17:20058795-20059495	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:20059327-20059377	PrEC	prostate:	n/a
2	chr17:20059327-20059377	PFSK-1	brain:	n/a
3	chr17:20059327-20059377	Hepatocyte	liver:	n/a
4	chr17:20059327-20059377	ovcar-3	ovarian:	n/a
5	chr17:20059331-20059381	Jurkat	blood:	n/a
6	chr17:20059331-20059381	NB4	blood:	n/a
7	chr17:20059327-20059377	NT2-D1	testis:	n/a
8	chr17:20059331-20059381	GM12892	blood:	n/a
9	chr17:20059327-20059377	H1-hESC	embryonic stem cell:	embryo
10	chr17:20059327-20059377	HEK293	kidney:	embryo
11	chr17:20059327-20059377	HUVEC	blood vessel:	n/a
12	chr17:20059331-20059381	RPTEC	kidney:	n/a
13	chr17:20059327-20059377	SK-N-SH	brain:	n/a
14	chr17:20059331-20059381	A549	lung:	n/a
15	chr17:20059327-20059377	NHBE	bronchial:	n/a
16	chr17:20059331-20059381	U87	brain:	n/a
17	chr17:20059327-20059377	GM12878	blood:	n/a
18	chr17:20059327-20059377	U87	brain:	n/a
19	chr17:20059327-20059377	AoSMC	blood vessel:	n/a
20	chr17:20059331-20059381	H1-hESC	embryonic stem cell:	embryo
21	chr17:20059327-20059377	T-47D	breast:	n/a
22	chr17:20059331-20059381	HAEpiC	amniotic membrane:	n/a
23	chr17:20059331-20059381	PrEC	prostate:	n/a
24	chr17:20059331-20059381	CMK	blood:	n/a
25	chr17:20059327-20059377	MCF-7	breast:	n/a
26	chr17:20059327-20059377	HCM	heart:	n/a
27	chr17:20059327-20059377	IMR90	lung:	fetal
28	chr17:20059331-20059381	ProgFib	skin:	n/a
29	chr17:20059331-20059381	Caco-2	colon:	n/a
30	chr17:20059331-20059381	AG09319	gingival:	n/a
31	chr17:20059327-20059377	HRPEpiC	eye:	n/a
32	chr17:20059327-20059377	HRCEpiC	kidney:	n/a
33	chr17:20059327-20059377	PANC-1	pancreas:	n/a
34	chr17:20059327-20059377	HPAEpiC	pulmonary alveolar:	n/a
35	chr17:20059327-20059377	AG09309	skin:	n/a
36	chr17:20059331-20059381	GM19239	blood:	n/a
37	chr17:20059331-20059381	BJ	skin:	n/a
38	chr17:20059327-20059377	NB4	blood:	n/a
39	chr17:20059331-20059381	HCT-116	colon:	n/a
40	chr17:20059331-20059381	BE2_C	brain:	n/a
41	chr17:20059327-20059377	HCPEpiC	choroid plexus:	n/a
42	chr17:20059331-20059381	K562	blood:	n/a
43	chr17:20059327-20059377	A549	lung:	n/a
44	chr17:20059331-20059381	AG04449	skin:	fetal
45	chr17:20059331-20059381	GM12891	blood:	n/a
46	chr17:20059331-20059381	NHDF-neo	bronchial:	n/a
47	chr17:20059331-20059381	HRE	kidney:	n/a
48	chr17:20059331-20059381	SAEC	small airway:	n/a
49	chr17:20059327-20059377	NH-A	brain:	n/a
50	chr17:20059327-20059377	HL-60	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:20058693..20060833-chr17:20107962..20111201,3	MCF-7	breast:
2	chr1:151253915..151254758-chr17:20058799..20059680,2	Hela-S3	cervix:
3	chr17:20057192..20060270-chr17:20108096..20110844,3	K562	blood:
4	chr17:20059180..20059804-chr5:108745357..108746183,2	Hela-S3	cervix:
5	chr17:19878871..19883594-chr17:20057277..20060362,4	K562	blood:

Variant related genes	Relation type
SPECC1	TF binding region
SPECC1	CpG island
ENSG00000198961	Chromatin interaction
ENSG00000143373	Chromatin interaction
ENSG00000108599	Chromatin interaction
ENSG00000128487	Chromatin interaction
ENSG00000232671	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1009082	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10438824	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11870147	1.00[ASN][1000 genomes]
rs11871827	1.00[ASN][1000 genomes]
rs11871945	1.00[ASN][1000 genomes]
rs12937827	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12941200	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12947950	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12948178	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12949485	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12952398	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1373147	1.00[ASN][1000 genomes]
rs1544421	1.00[ASN][1000 genomes]
rs1561974	1.00[ASN][1000 genomes]
rs17686622	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17686798	0.81[AMR][1000 genomes]
rs17686839	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17759923	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1812934	1.00[ASN][1000 genomes]
rs1985810	1.00[ASN][1000 genomes]
rs1992562	1.00[ASN][1000 genomes]
rs2013441	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2013576	1.00[ASN][1000 genomes]
rs2034109	1.00[ASN][1000 genomes]
rs2080673	1.00[ASN][1000 genomes]
rs2107566	1.00[ASN][1000 genomes]
rs2120282	1.00[ASN][1000 genomes]
rs2158473	1.00[ASN][1000 genomes]
rs2165897	1.00[ASN][1000 genomes]
rs2189710	1.00[ASN][1000 genomes]
rs2243732	1.00[ASN][1000 genomes]
rs2263175	1.00[ASN][1000 genomes]
rs2386429	1.00[ASN][1000 genomes]
rs2386485	1.00[ASN][1000 genomes]
rs2526458	1.00[ASN][1000 genomes]
rs2526460	1.00[ASN][1000 genomes]
rs2526464	1.00[ASN][1000 genomes]
rs2526467	1.00[ASN][1000 genomes]
rs2526468	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526469	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526470	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526471	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526472	1.00[ASN][1000 genomes]
rs2526473	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526474	1.00[ASN][1000 genomes]
rs2526475	1.00[ASN][1000 genomes]
rs2526480	1.00[ASN][1000 genomes]
rs2526483	1.00[ASN][1000 genomes]
rs2526484	1.00[ASN][1000 genomes]
rs2526488	1.00[ASN][1000 genomes]
rs2526490	1.00[ASN][1000 genomes]
rs2526491	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526492	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703772	1.00[ASN][1000 genomes]
rs2703773	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703774	1.00[ASN][1000 genomes]
rs2703778	1.00[ASN][1000 genomes]
rs2703779	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703780	1.00[ASN][1000 genomes]
rs2703782	1.00[ASN][1000 genomes]
rs2703784	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703785	1.00[ASN][1000 genomes]
rs2703787	1.00[ASN][1000 genomes]
rs2703789	1.00[ASN][1000 genomes]
rs2703790	1.00[ASN][1000 genomes]
rs2703791	1.00[ASN][1000 genomes]
rs2703792	1.00[ASN][1000 genomes]
rs2703794	1.00[ASN][1000 genomes]
rs2703797	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703799	1.00[ASN][1000 genomes]
rs2703801	1.00[ASN][1000 genomes]
rs2703802	1.00[ASN][1000 genomes]
rs2703804	1.00[ASN][1000 genomes]
rs2703806	1.00[ASN][1000 genomes]
rs2703808	1.00[ASN][1000 genomes]
rs2703810	1.00[ASN][1000 genomes]
rs2703811	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2703813	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703815	1.00[ASN][1000 genomes]
rs2703816	1.00[ASN][1000 genomes]
rs2703817	1.00[ASN][1000 genomes]
rs2703818	1.00[ASN][1000 genomes]
rs2703820	1.00[ASN][1000 genomes]
rs2703821	1.00[ASN][1000 genomes]
rs34089239	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34644796	1.00[ASN][1000 genomes]
rs34712254	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35103332	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36051592	0.82[AMR][1000 genomes]
rs3850783	1.00[ASN][1000 genomes]
rs3850784	1.00[ASN][1000 genomes]
rs3850785	1.00[ASN][1000 genomes]
rs4588033	1.00[ASN][1000 genomes]
rs4924809	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924810	1.00[ASN][1000 genomes]
rs4925089	1.00[ASN][1000 genomes]
rs62067558	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6587063	0.83[ASN][1000 genomes]
rs6587064	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7207611	1.00[ASN][1000 genomes]
rs7207817	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7223488	0.83[ASN][1000 genomes]
rs8070401	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071665	1.00[ASN][1000 genomes]
rs8074047	1.00[ASN][1000 genomes]
rs8079701	1.00[ASN][1000 genomes]
rs9325894	1.00[ASN][1000 genomes]
rs9892630	1.00[ASN][1000 genomes]
rs9896221	1.00[ASN][1000 genomes]
rs9896709	1.00[ASN][1000 genomes]
rs9897328	1.00[ASN][1000 genomes]
rs9900166	1.00[ASN][1000 genomes]
rs9904928	1.00[ASN][1000 genomes]
rs9905493	1.00[ASN][1000 genomes]
rs9915059	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1060337	chr17:19828636-20204872	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv543257	chr17:19828636-20204872	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv907871	chr17:19927699-20088492	Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv482438	chr17:19934376-20089005	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv833395	chr17:19969959-20124084	Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1067100	chr17:20007480-20464520	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
9	nsv543260	chr17:20007480-20464520	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
10	nsv482830	chr17:20012748-20169153	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv833396	chr17:20029183-20150808	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv2003	chr17:20046306-20090653	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	esv3314150	chr17:20058385-20061233	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	esv3314151	chr17:20058385-20061233	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62066869	SPECC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20058400-20060000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
2	chr17:20058400-20060200	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr17:20058600-20059400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr17:20058600-20059600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:20058600-20060000	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr17:20058600-20060200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:20058600-20060400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr17:20058600-20060400	Active TSS	Duodenum Mucosa	Duodenum
9	chr17:20058800-20059600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr17:20058800-20059600	Active TSS	Left Ventricle	heart
11	chr17:20058800-20059800	Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr17:20058800-20059800	Active TSS	Right Ventricle	heart
13	chr17:20058800-20059800	Active TSS	NHLF	lung
14	chr17:20058800-20060000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr17:20058800-20060000	Active TSS	Colon Smooth Muscle	Colon
16	chr17:20058800-20060000	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
17	chr17:20058800-20060000	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr17:20058800-20060200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr17:20058800-20060200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:20058800-20060200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr17:20058800-20060200	Active TSS	Primary T cells from cord blood	blood
22	chr17:20058800-20060200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr17:20058800-20060200	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr17:20058800-20060200	Active TSS	Fetal Intestine Large	intestine
25	chr17:20058800-20060200	Active TSS	Fetal Intestine Small	intestine
26	chr17:20058800-20060200	Active TSS	Rectal Smooth Muscle	rectum
27	chr17:20058800-20060200	Active TSS	Osteobl	bone
28	chr17:20058800-20060400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr17:20058800-20060400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr17:20058800-20060400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr17:20058800-20060400	Active TSS	Aorta	Aorta
32	chr17:20058800-20060400	Active TSS	Esophagus	oesophagus
33	chr17:20058800-20060400	Active TSS	Ovary	ovary
34	chr17:20058800-20060400	Active TSS	Placenta Amnion	Placenta Amnion
35	chr17:20058800-20060400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr17:20058800-20060600	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr17:20058800-20060600	Active TSS	Right Atrium	heart
38	chr17:20058800-20060600	Active TSS	HSMM	muscle
39	chr17:20058800-20060800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr17:20058800-20060800	Active TSS	H9 Cell Line	embryonic stem cell
41	chr17:20058800-20060800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr17:20058800-20060800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr17:20058800-20060800	Active TSS	Brain Anterior Caudate	brain
44	chr17:20058800-20061000	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr17:20058800-20061000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr17:20058800-20061000	Active TSS	NH-A	brain
47	chr17:20058800-20061200	Active TSS	Brain Angular Gyrus	brain
48	chr17:20058800-20061200	Active TSS	Brain Substantia Nigra	brain
49	chr17:20059000-20059400	Active TSS	Primary B cells from cord blood	blood
50	chr17:20059000-20059400	Active TSS	Primary hematopoietic stem cells	blood

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